Alep020126.1
Basic Information
- Insect
- Acronicta leporina
- Gene Symbol
- -
- Assembly
- GCA_947256265.1
- Location
- OX366522.1:788887-797305[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.2e-12 3.2e-09 36.8 0.0 4 39 149 185 146 189 0.90 2 4 5.4e-11 4.1e-08 33.2 0.2 3 39 202 238 200 242 0.91 3 4 1.2e-14 9.1e-12 44.9 0.1 2 45 256 300 255 300 0.96 4 4 2.3e-18 1.8e-15 56.8 0.0 1 42 307 349 307 351 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGACTGTCTCAAGTGAAATGCGAACCGCTCTCCGACGAAGAAGACAGCGACTCACAATTCACGCACAGTTATTTATCCAGTCAGGAGGGTAGTGGCTTGGAGGAGCTAGTACCGCTGGCACCAGCTGGCCCTGCTGCCACGCCAGTGTGTATCAAGCAGGAGCGCGCGGACTCCCCGCCGACTACAACCCTAGAGACGCTAGAGTCGGCACCGCATAATGCTAAGAGCACGTCACTGCTGGGCCATCATTTGGAATTCATGACTGTGAGTGATGTTCCCGACTCCACCGACTTCATACCACTGCTAGCTGTCAAAGATGAACCCTCGTCAGAAGGAGAGCAACCGCAACTTAGTGGAGAAGATACAAGTGACTCATGTGGCCGACAAGCCTCGCCCGCGCCACGACACAGTCCCAAGAGTTGGACCCAACACGACATGGAGCGAGCACTGGACGCGCTGCGGAGCCATCAGATGAGTCTCACCAAGGCATCAGCGACGTATGGCATACCGTCGACGACTTTATGGCAGCGCGCGCACCGCTTGGGGATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCCTGGAGCGACGCCGACCTGCGCGGAGCACTGCACGCGCTCCGAGCCGGCGCTATATCCGCTAACAAGGCCAGCAAGGCGTATGGAATTCCGAGCAGCACTCTGTACAAGATAGCCCGCCGGGAAGGTATCCGGCTGTCAGCGCCGTTCAACGCAGCGCCGACGGCGTGGAGGCGCGCGGACCTGCAGCTGGCGCTGGCCTCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCCGCCTCGCAGTACGGGATACCCACCGGAACTCTTTATGGCAGATGTAAACGTGAAGGCATCGAGCTTTCTCGCTCCAACCCCACGCCCTGGTCGGAAGACGCCATGGGTGAAGCGCTTGAGGCTGTCAGGGTGGGCCAGATGTCAATCAACCAGGCTGCGATCCACTACAACCTGCCATACTCGTCGCTCTACGGCAGGTTCAAGAGGTGCAAATATCAGATGCAGGGCGTCTCCCAAAACCTGCAGCAGGTGCATCAAGAACGTGTAGAGCCGGCCTCCGTCGACGTAGAGGCGCCGCAGTACTATGCGCAGGCGCCGCAGCACGAGGCGGAGCCGCTCGCCTACGCGCATGCGCACGACTACACACACCCGCTCGACCAGTACGGACAGTTCTACCACAGTTTCAACGGCATTGCCACCAGCTGA
- Protein Sequence
- MPGYGLSQVKCEPLSDEEDSDSQFTHSYLSSQEGSGLEELVPLAPAGPAATPVCIKQERADSPPTTTLETLESAPHNAKSTSLLGHHLEFMTVSDVPDSTDFIPLLAVKDEPSSEGEQPQLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRSHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSDADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGVSQNLQQVHQERVEPASVDVEAPQYYAQAPQHEAEPLAYAHAHDYTHPLDQYGQFYHSFNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_01377388;
- 80% Identity
- -