Sexi018177.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022075.1:13923169-13934280[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.8e-12 1.9e-09 37.4 0.0 4 39 148 184 145 188 0.90 2 4 6.9e-11 2.7e-08 33.7 0.3 2 39 200 237 199 241 0.92 3 4 1.8e-15 7.1e-13 48.4 0.0 2 45 255 299 254 299 0.96 4 4 1.2e-17 4.6e-15 55.4 0.0 1 42 306 348 306 350 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGAGTGTCTCAGGTGAAATGCGAGCCACTCTCGGACGAAGAAGACGGCGACTCACAATTTGCGCACAGTTATCTATCCAGTCAGGCCAGTGGTTTAGAGGAGCTGGCACCCCTGGCGCCCGCAGGTCCGGCTGCTACACCAGTTTGTGTGAAACAAGAACGAGCAGAGACGCCACCGGCCACAACACTAGAGACGCTCGAGTCAGCGCCGCACAATGCCAAGAGCACATCATTCCTGGATCGGCAAATGGACTTTATGAACGTGCACGAAGTGCCTGACTCCACAGACTTCATGCCGCTGCTGGCCATCAAGGACGAACCCTCGTCTGAAGGTGAACAACATCATCTGAGCGGTGATGACACCAGCGACTCGTGTGGTCGCCAGGCCTCGCCCGCGCCGCGCCACAGCCCCAAGAGCTGGACGCAGCATGACATGGAGCGGGCACTAGATGCGCTTAGAAACCATCAGATGAGCCTCACAAAGGCATCAGCAACATACGGCATTCCATCGACAACGTTATGGCAGCGTGCCCACCGGTTGGGCATAGACACGCCGAAGAAGGAGGGTGCTGCAAAGTCCTGGAGCGAGGCAGACTTGAGGGGGGCACTGCATGCCTTGAGAGCGGGAGCCATCTCCGCTAATAAGGCCAGCAAAGCATATGGTATCCCGAGCAGTACCCTGTACAAGATAGCGCGGCGCGAGGGCATCCGGCTGTCGGCTCCGTTCAACGCGGCGCCGACGTCGTGGCGGCGCGCCGACCTGCAGCTGGCGCTGGCCTCCATCCGCTGCGGCGCCGTCTCCGTGCAGCGCGCCGCCACCACATACGGGATACCCACCGGGACATTATATGGTCGTTGTAAGCGAGAAGGTATCGAGTTGTCTCGCTCAAACCCCACACCTTGGTCAGAAGACGCCATGGGCGAAGCATTGGAAGCAGTCAGAGTGGGCCAGATGTCGATCAACCAAGCAGCCATCCACTTCAACCTGCCGTACTCCTCACTGTACGGGAGGTTCAAGAGGTGCAAGTACCAAATGCAGGGCGTCCCACAAACTccgcaacaacaacaacaagatCTTCGCAAACTGGAACAAGAACAACCAATGGAGGTTCCCCCGTACTATCAACAGATGGCGCCACACCACGAACAGGACACGCATGCATACACACACGTGCACGAATACACGCACACACACGACCAGTACGGACAGTACTACCAAAGTTTTAACAGTATTGCGACCAGCTGA
- Protein Sequence
- MPGHGVSQVKCEPLSDEEDGDSQFAHSYLSSQASGLEELAPLAPAGPAATPVCVKQERAETPPATTLETLESAPHNAKSTSFLDRQMDFMNVHEVPDSTDFMPLLAIKDEPSSEGEQHHLSGDDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQLALASIRCGAVSVQRAATTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQGVPQTPQQQQQDLRKLEQEQPMEVPPYYQQMAPHHEQDTHAYTHVHEYTHTHDQYGQYYQSFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- -
- 80% Identity
- -