Alot023386.2
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- -
- Assembly
- GCA_947364205.1
- Location
- OX376236.1:1141634-1153229[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 6.4e-11 2.2e-08 34.1 0.0 4 39 148 184 146 188 0.90 2 5 9.4e-11 3.3e-08 33.6 0.3 2 39 200 237 199 241 0.92 3 5 1 3.6e+02 1.4 0.0 28 39 264 275 264 279 0.87 4 5 4.2e-14 1.5e-11 44.3 0.0 2 45 293 337 292 337 0.96 5 5 5.2e-18 1.8e-15 56.8 0.1 1 43 344 387 344 389 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCGCAAGTGAAATGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCACAATTCGCGCACAGTTATCTATCCAGTCAGGGCAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCAGCTGCCACGCCAGTGTGTGTCAAGCAGGAGCGAGCCGAGTCACCACCAGCTACCACGCTTGAGACGCTCGAGTCAGCACCACATAATGCCAAGAGCACGTCCCTGTTGGTTCGTCACATGGAGTTCATGAACGTCACCGAAGTGCCTGAGTCCACTGACTTCATGCCGCTGTTGGCTGTCAAAGATGAACCCTCGTCAGAAGGTGAACAACCACATCTTAGCGGCGAAGACACGAGCGACTCCTGTGGCCGGCCAGCTTCACCCGCGCCACGACACAGTCCCAAGAGTTGGAACCAGCATGACATGGAACGAGCTTTGGATGCTCTCAGAAATCACCACATGAGCCTTACGAAGGCATCAGCAACCTACGGCATTCCGTCCACCACACTCTGGCAGCGAGCCCACCGGCTGGGCATCGACACGCCAAAGAAGGAAGGAGCGGCCAAGTCCTGGAGCGAGGCTGATTTGCGAGGGGCACTCCATGCCCTGAGGGCAGGTGCCATATCCGCTAATAAAGCCAGCAAAGCTTATGGCATTCCCAGCAGCACCCTATACAAGATAGCTCGGCGGGAAGGCATCCGCTTGTCGGCGCCGTTCAACGCGGCGCCCACCGCGTGGCGCCGCGTTGAACCCATCACTAACATTTGCATTCCCAGCAGCACCCTATACAAGATAGCTCGGCGGGAAGGCATCCGCTTGTCGGCGCCGTTCAACGCGGCGCCCACCGCGTGGCGCCGCGCCGATCTGCAGCTGGCGCTGGCCTCCATCCGCTGCGGCGCCAGCTCTGTGCAGCGTGCTGCCACACAGTATGGGATACCTACAGGAACACTTTATGGTCGGTGTAAACGAGAGGGCATCGAGCTATCTCGATCCAACCCCACGCCGTGGTCTGAAGACGCCATGGGCGAAGCACTCGAAGCCGTCAGGGTGGGCCAGATGTCCATCAACCAGGCAGCAATCCACTACAACCTGCCGTACTCGTCGCTCTACGGGAGATTCAAGAGGTGCAAATATCAGATGCAGAGTGTTCCACAAAATCAGCAGCAACCACAGCAAGATTCCCACAAAATGGAGCAAGAGCACCAATCCCACGAGGTGCAACATTACTACCACCAGGCACCATCCCACCAGGAACCGGACCTACACACATACGCCCACATGCACGAATATAATCACCATGAGCAGTACGCACAGTACTACCAGGGGTTTAACAGTATTGCGACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERAESPPATTLETLESAPHNAKSTSLLVRHMEFMNVTEVPESTDFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRPASPAPRHSPKSWNQHDMERALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRVEPITNICIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQSVPQNQQQPQQDSHKMEQEHQSHEVQHYYHQAPSHQEPDLHTYAHMHEYNHHEQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- -
- 80% Identity
- -