Lwla024409.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388039.1:26399568-26409937[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.7e-12 2.3e-09 37.4 0.0 4 39 148 184 145 188 0.90 2 4 8.2e-11 3.4e-08 33.7 0.3 2 39 200 237 199 241 0.92 3 4 1.1e-14 4.7e-12 46.1 0.1 2 45 255 299 254 299 0.96 4 4 5.1e-18 2.1e-15 56.8 0.0 1 42 306 348 306 350 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCGCAAGTGAAATGCGAACCGCTCTCCGACGAAGAAGACAGCGACTCACAGTTCACGCACAGTTATTTATCCAGTCAGGGCAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCAGGTCCAGCCGCCACACCGGTGTGTGTCAAGCAGGAGCGAGCCGAGTCTTCTCCAGCTACCACATTGGAAACGCTCGAGTCAGCTCCTCATAATGCCAAGAGCACGTCACTGTTGGACCGTCACATGGACTTTATGAACGTCACCGAAGTGCCTGACTCCACCGACTTCATGCCTCTGCTGACTGTCAAGGATGAACCCTCATCTGAAGGTGAACAACCACACCTTAGCGGAGAAGACACTAGCGACTCCTGCGGCCGCCAAGCATCGCCCGCACCGCGACACAGCCCCAAGAGTTGGACCCAGCACGACATGGAACGAGCCCTGGACGCTCTTAGAAACCACCAGATGAGCCTTACAAAGGCATCAGCAACGTACGGCATCCCGTCCACCACACTCTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGAGCCGCCAAGTCCTGGAGCGAGGCGGACCTACGAGGGGCTCTGCACGCGCTTAGGGCGGGCGCTATCTCCGCTAACAAGGCCAGCAAGGCTTATGgcatcccCAGCAGTACACTGTACAAGATAGCTCGTCGCGAGGGCATCCGCCTATCGGCGCCGTTTAACGCGGCACCCACGTCCTGGCGGCGCGCCGACCTGCAGCTGGCGCTCGCCTCCATCCGCGCCGGCGCCAGCTCCGTGCAGCGCGCCGCCTCGCAGTATGGCATACCAACAGGAACGCTGTACGGGAGGTGTAAGCGAGAGGGCATCGAGCTGTCTCGCTCCAACCCCACGCCGTGGTCCGAAGACGCTATGGGCGAAGCGCTTGAAGCTGTCAGAGTGGGGCAGATGTCCATCAACCAGGCGGCGATCCACTACAATCTGCCGTACTCCTCTCTCTACGGGAGATTCAAGAGGTGCAAGTATCAGATGCAGGGTATCCCACAAAATCAGCAGCAACCACAGCCAGATCTCCACAAAATGGAGCAAGAGCACCAGTCACACGACGTGCAGCAGTACTACCACCAGGTGCCTCCCCAGCAGGAGCCGGACCCACACACATACACCCACATGCACGAGTATACTCACCAAGATCAGTACGCGCAGTACTACCAGGGTTTTAACAGTATAGCGACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFTHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERAESSPATTLETLESAPHNAKSTSLLDRHMDFMNVTEVPDSTDFMPLLTVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQLALASIRAGASSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGIPQNQQQPQPDLHKMEQEHQSHDVQQYYHQVPPQQEPDPHTYTHMHEYTHQDQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -