Lsal004463.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- -
- Assembly
- GCA_948253155.1
- Location
- OX411818.1:3560205-3573465[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.8e-12 2.2e-09 37.6 0.0 4 39 152 188 149 192 0.89 2 4 7.9e-11 3.6e-08 33.7 0.3 2 39 204 241 203 245 0.92 3 4 3e-14 1.4e-11 44.7 0.0 2 45 259 303 258 303 0.96 4 4 1.2e-17 5.4e-15 55.6 0.0 1 43 310 353 310 355 0.95
Sequence Information
- Coding Sequence
- ATGCTAGGCCACGGTCTGTCTCAGGTGAAATGCGAGCCACTCTCGGACGAGGAGGACAGTGAGTCACAGTTCGCGCACAGTTACATATCTAATCAGGGCAATGGCTTGGAGGAGCTGGCACCGTTGGCGCCAGCGGGTCCCGCGGCAACACCTGTCTGCGTTAAACAAGAACGTGCATCATCGCCAGCCACGCTGGAGACCCTCGAGTCAGCGCCCCAGCATACTAAAAGTATACCTGGTCTGCAGAGTATACCTGGTCTACCGAGTATACTGGATCGACACCTGACGATGATGAATAGCAACGAAATGTCTGACTTCGTGCCACTTTTAGCTGTTAAAGATGAACCAACGTCTGAAGGAGAAGGCCATCTTAGCGGTGAAGACACGAACGATTCATGTGGTCAACAGACATCGCCCACACCGCGGAACAGTCCAAAGAGTTGGACACAGCAAGACATGGAGCGCGCTCTCGACGCACTTAGAAACCATCAAATGAGTCTCACCAAGGCATCAGCGACCTACGGTATCCCCTCTACGACGCTATGGCAGCGTGCTCACAGGCTGGGCATTGACACTCCAAAGAAAGAGGGCGCGGCCAAGTCATGGAGCGAGGCAGACCTACGCGGCGCGCTGCATGCTCTCCGTGCCGGCGCTATCTCTGCCAACAAAGCGAGCAAAGCTTATGGAATACCAAGTAGCACTTTATACAAGATAGCTCGTCGAGAAGGGATCCGGTTGTCAGCACCGTTCAACGCAGCACCAACTTCCTGGCGCCGCGCCGACCTGCAGCTGGCGTTAGCTTCCATACGTTGTGGGGCCAGCTCTGTGCAACGTGCCGCCTCTACCTACGGAATACCAACTGGAACGTTGTATGGTCGATGTAAGCGAGAAGGTATCGAATTATCACGCTCCAACCCAACCCCGTGGTCTGAAGACGCTATGGGGGAAGCACTAGAAGCAGTCAGAGTGGGCCAAATGTCAATAAATCAGGCAGCAATACACTTCAACTTGCCGTATTCATCGTTGTACGGCAGGTTCAAGAGATGCAAGTATCAGATGCAGAGCATCACTCAAAATCAACAACAGAGCACCGACGTTCAGAAAACTGAAATGGACCCTCTAGAAGTACATCAATATTACCACCAAGTATCTACGTTTGACCACGAGACGTATACATATTCACATATGCCTGAATACACACACGATACACCTGTGCATGATCATTACGAACAATATTACCAAACTTTCAACAGTATAGCCACTAGCTGA
- Protein Sequence
- MLGHGLSQVKCEPLSDEEDSESQFAHSYISNQGNGLEELAPLAPAGPAATPVCVKQERASSPATLETLESAPQHTKSIPGLQSIPGLPSILDRHLTMMNSNEMSDFVPLLAVKDEPTSEGEGHLSGEDTNDSCGQQTSPTPRNSPKSWTQQDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQLALASIRCGASSVQRAASTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQSITQNQQQSTDVQKTEMDPLEVHQYYHQVSTFDHETYTYSHMPEYTHDTPVHDHYEQYYQTFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- -
- 80% Identity
- -