Cvac018404.2
Basic Information
- Insect
- Conistra vaccinii
- Gene Symbol
- -
- Assembly
- GCA_948150665.1
- Location
- OX411332.1:22672127-22688255[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.2e-11 1.7e-08 34.6 0.0 4 39 148 184 145 188 0.90 2 5 1.6e-11 1.3e-08 35.0 0.2 2 39 200 237 199 241 0.93 3 5 1.4e-09 1.1e-06 28.8 0.4 2 32 255 285 254 285 0.95 4 5 5.1e-06 0.004 17.4 0.0 26 45 298 318 297 318 0.95 5 5 2.7e-18 2.1e-15 56.7 0.0 1 42 325 367 325 369 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCGCAAGTGAAATGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCACAATTCGCGCACAGTTATCTATCCAGTCAGGGCAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCTGCCACGCCAGTGTGTGTCAAGCAGGAGCGAGCCGAGTCACCACCAGCTACCACGCTTGAGACGCTCGAGTCAGCACCACATAATGCCAAGAGTACGTCCCTGTTGGTTCGTCACATGGAGTTCATGAACGTCACCGAAGTGCCTGACTCCACTGACTTCATGCCGCTGTTGGCTGTCAAAGATGAACCCTCGTCCGAAGGTGAACAACCACATCTTAGCGGCGAAGACACGAGCGATTCCTGTGGCCGGCAAGCTTCGCCCGCGCCACGGCACAGTCCCAAGAGTTGGACCCAGCACGACATGGAACGAGCTTTGGATGCTCTCAGAAACCACCACATGAGCCTTACGAAGGCATCAGCAACCTACGGCATTCCGTCCACCACACTCTGGCAGCGAGCCCACCGGCTGGGCATCGACACGCCAAAGAAGGAAGGAGCGGCCAAGTCCTGGAGCGAGACTGATTTGCGAGGGGCACTTCATGCCTTGAGGGCAGGTGCCATCTCCGCTAATAAAGCCAGCAAAGCTTATGGCATTCCCAGCAGCACTCTCTACAAGATAGCTCGCCGCGAAGGCATCCGCCTGTCGGCGCCCTTCAACGCGGCGCCCACGGCGTGGCGGCGCGCCGACCTGGCGCTGGCGCTGGCCGCCATCCGCGCCGGCGCCAGCTCCGTGCAGCGCGCCGCCACGCAGTACGGGATACCTACAGGTACAGGTAGCGCGCCGCCACGCAGTACGGGATACCTACAGTACGGGATACCTACAGGAACACTTTATGGTCGGTGTAAGCGAGAGGGCATCGAGCTGTCTCGGTCCAACCCCACGCCGTGGTCTGAAGACGCCATGGGTGAAGCACTCGAAGCCGTCAGGGTGGGCCAGATGTCCATCAACCAGGCAGCGATCCACTACAACCTGCCGTACTCCTCGCTCTACGGGAGATTCAAGAGGTGCAAGTATCAGATGCAGGGTGTTCCACAAAATCAACCGCAACCACTGCAGGATCCCAACAAAATGGAGCAAGAGCACCAATCCCACGAGATGCACCAGTACTACCATCAGGTACCATCTCACCAAGAACCGGACCTACAGACATACGCCCACATGCACGAATATAATCACCAAGAGCAGTACGCACAGTACTACCAGGGTTTTAACAGTATTGCGACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERAESPPATTLETLESAPHNAKSTSLLVRHMEFMNVTEVPDSTDFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSETDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLALALAAIRAGASSVQRAATQYGIPTGTGSAPPRSTGYLQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGVPQNQPQPLQDPNKMEQEHQSHEMHQYYHQVPSHQEPDLQTYAHMHEYNHQEQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -