Slit008939.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- -
- Assembly
- GCA_002706865.1
- Location
- NC:12972388-12987169[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-12 6.9e-10 38.3 0.0 4 39 148 184 145 188 0.89 2 4 4.6e-11 1.8e-08 33.7 0.3 2 39 200 237 199 241 0.92 3 4 1.5e-14 5.9e-12 44.9 0.1 2 45 255 299 254 299 0.96 4 4 7.9e-18 3.1e-15 55.4 0.0 1 42 306 348 306 350 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCTCAAGTGAAATGCGAGCCACTTTCGGACGAAGAAGACAGCGACTCACAATTTGCGCACAGTTATCTATCCAGTCAGGCCAGTGGTTTAGAGGAGCTAGCACCCCTGGCACCTGCAGGCCCAGCAGCGACACCTGTGTGTGTGAAACAGGAACGAGCAGAGACCCCACCGACCACTACACTAGAGACGCTCGAGTCAGCACCACACAATGCTAAGAGCACGTCGTTGCTGGACCGGCACATGGACTTTCTGAACGTGCACGAGGTACCTGACTCCACGGACTTCATGCCGCTGCTGGCCATCAAAGACGAACCTTCATCTGAAGGTGAACAACACCATCTAAGTGGTGAGGACACCAGCGACTCGTGTGGCCGCCAAACCTCGCCTGCTCCCCGACACAGCCCCAAGAGTTGGACTCAGCAGGACATGGATCGCGCGCTGGATGCACTTAGAAACCATCAGATGAGTCTTACCAAGGCATCAGCAACATACGGCATCCCATCGACTACGTTATGGCAGCGTGCCCACCGGCTGGGCATAGACACGCCGAAGAAAGAGGGAGCAGCCAAGTCCTGGAGCGAGGCAGATTTAAGAGGGGCACTGCATGCCTTGAGGGCTGGTGCCATCTCCGCTAATAAGGCCAGCAAAGCGTATGGTATCCCCAGCAGCACGCTGTACAAGATAGCTCGGCGCGAGGGTATCCGCCTGTCGGCCCCGTTCAACGCGGCGCCGACCGCGTGGCGGCGCGCCGACCTGCAGCTGGCGCTGGCGTCCATCCGCTGCGGCGCCTCGTCCGTGCAGCGCGCCGCCTCGCAGTACGGGATACCCACTGGAACGTTGTATGGTCGGTGTAAGCGAGAAGGTATCGAGTTATCTCGCTCCAATCCCACGCCGTGGTCGGAAGACGCCATGGGCGAAGCTCTCGAAGCAGTCAGaGTGGGCCAGATGTCGATCAACCAGGCAGCCATCCACTTCAACCTGCCGTACTCCTCACTGTACGGGAGGTTCAAGAGGTGCAAGTACCAGATGCAGGGTGTCCTTCAAGCTCCGCAGCCACTACAGCAGGACCCAGCCAGCACGGAGCACGCCCCGCCACCGGCCGCGCCCCCCGCCCCGCACCACACGCACGGGTACACACACACGCACGagtacacgcacacacacgagtacacgcacacacacgACCAGTACGGCCAGTACTACCAACATTTCAATAGTATTGTGACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHSYLSSQASGLEELAPLAPAGPAATPVCVKQERAETPPTTTLETLESAPHNAKSTSLLDRHMDFLNVHEVPDSTDFMPLLAIKDEPSSEGEQHHLSGEDTSDSCGRQTSPAPRHSPKSWTQQDMDRALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQGVLQAPQPLQQDPASTEHAPPPAAPPAPHHTHGYTHTHEYTHTHEYTHTHDQYGQYYQHFNSIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- -
- 80% Identity
- -