Asor008453.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000022.1:7068863-7084166[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.2e-12 2.6e-09 37.4 0.0 4 39 148 184 145 188 0.90 2 4 1.8e-11 1.4e-08 35.1 0.2 2 39 200 237 199 241 0.93 3 4 2e-14 1.7e-11 44.5 0.0 2 45 255 299 254 299 0.96 4 4 2.9e-18 2.4e-15 56.8 0.0 1 42 306 348 306 350 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCGCAAGTGAAATGCGAACCGCTCTCGGATGAAGACGACAGCGACTCACAATTCGCGCACAGTTATCTATCCAGTCAGGGCAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCTGCCACGCCAGTGTGCGTCAAGCAGGAGCGAGCCGAGTCACCACCAACTACCACGCTAGAGACGCTCGAGTCAGCACCACATAATGCCAAGAGCTCGTCCCTGTTGGATCGCCACATGGACTTCATGAACGTCACCGAAGTGTCTGACTCCACTGACTTCATGCCGCTGCTGGTTGTCAAGGATGAACCTTCGTCCGAAGGTGAACAACCACATCTTAGCGGTGAAGACACGAGCGACTCCTACGGCCGACAGTCTTCGCCCGCGCCACGACACAGCCCCAAGAGTTGGACCCAGCACGACATGGAACGAGCTTTGGATGCTCTCAGAAACCACCAGATGAGCCTTACGAAGGCATCAGCAACCTACGGCATTCCGTCCACCACGCTCTGGCAGCGAGCCCACCGGCTGGGCATCGACACGCCAAAGAAGGAAGGAGCGGCCAAGTCCTGGAGCGAAACTGATCTGCGAGGGGCACTGCATGCCTTGAGGGCAGGCGCTATTTCTGCTAATAAGGCCAGCAAAGCTTATGGCATTCCCAGCAGTACACTATACAAGATAGCTCGTCGGGAAGGCATCCGCCTCTCGGCGCCCTTCAACGCGGCGCCCACTGCGTGGCGCCGCGCCGACCTGCAGCTGGCGCTGGCTTCCATACGTTGCGGCGCCAGCTCTGTACAACGTGCTGCCACGCAATATGGGATACCTACAGGAACGCTATATGGACGGTGCAAGCGAGAGGGAATCGAGCTATCTCGCTCCAATCCCACTCCGTGGTCTGAAGACGCCATGGGTGAAGCTCTCGAAGCTGTCAGGGTGGGCCAGATGTCCATCAACCAGGCAGCGATCCACTACAACCTTCCGTACTCCTCGCTCTACGGGAGATTCAAGAGGTGCAAGTATCAGATGCAGGGTGTCCCTCAAAATCAGCAGCAAGCACAGCAAGATCCCCACAAAATGGAGCAAGAGCAACAACCCCACGAGGTACCACAGTACTACCACCAGGTATCATCCGCTAACCAGGAACCGGATCCGCACACATACGCCCACATGCACGAATATACTCACCAAGACCAGTACGCACAGTACTACCAGGGTTTTAACAGTATTGCGACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEDDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERAESPPTTTLETLESAPHNAKSSSLLDRHMDFMNVTEVSDSTDFMPLLVVKDEPSSEGEQPHLSGEDTSDSYGRQSSPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSETDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGVPQNQQQAQQDPHKMEQEQQPHEVPQYYHQVSSANQEPDPHTYAHMHEYTHQDQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -