Doo008877.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411720.1:30692574-30722132[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 3.7e-09 37.2 0.0 4 39 208 244 205 248 0.90 2 4 1.7e-10 5.4e-08 33.5 0.3 2 39 260 297 259 301 0.92 3 4 7.5e-14 2.4e-11 44.2 0.0 2 45 315 359 314 359 0.96 4 4 1.1e-17 3.4e-15 56.5 0.0 1 42 366 408 366 410 0.95
Sequence Information
- Coding Sequence
- ATGGCGGGAAAAGTTGGACAACACCACGTAGAAGATGGCGGGAAAAGCTTGATAACACCACGTAGAAGATGCCGGGAAAAGCTGGTCAACACTACGAAGAAGATGGCGGGTAAAGCTGGACAACACCACGTAGAAGATGGCGAGAAAAGCTGGTCAACACCACGAAGAAGATGGCGGGAAATGCCCGGCCACGGACTGTCGCGAGTGAAGTGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCACAATTCGCGCACAGTTATCTATCCAGTCAGGGCAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCTGCCACGCCAGTGTGTGTCAAGCAGGAGCGAGCTGAGTCACCACCAGCTACCACACTTGAGACGCTCGAGTCAGCACCACATAATGCCAAGAGTACGTCCCTGTTGGTTCGTCACATGGAGTTCATGAACGTCACCGAAGTGCCTGACTCCGCTGACTTCATGCCGCTGCTGGCTGTCAAGGATGAGCCCTCCTCCGAAGGTGAACAACCACATCTCAGCGGTGAAGACACGAGTGACTCCTGCGGCCGGCAAGGTTCGCCCGCACCACGACACAGCCCCAAGAGCTGGACCCAGCACGACATGGAACGAGCTTTGGATGCTCTCAGAAACCATCAAATGAGCCTTACGAAGGCATCAGCAACCTACGGCATTCCGTCCACCACGCTCTGGCAGCGAGCCCACCGCCTGGGCATCGACACGCCAAAGAAGGAAGGAGCGGCCAAGTCCTGGAGTGAGGCTGATCTGCGAGGGGCACTGCATGCCTTGAGGGCAGGTGCTATCTCCGCTAATAAGGCCAGCAAAGCTTATGGCATTCCCAGCAGTACACTATACAAGATAGCTCGTCGGGAGGGCATCCGCCTGTCGGCGCCATTCAACGCGGCGCCCACCGCATGGCGCCGGGCCGACCTGCAGCTGGCGCTAGCTTCCATCCGCTGCGGCGCCAGCTCTGTACAACGTGCTGCCACGCAGTATGGGATACCTACAGGAACGCTATATGGACGGTGCAAGCGAGAGGGCATCGAGCTGTCTCGCTCCAATCCCACGCCATGGTCTGAAGACGCCATGGGTGAAGCACTTGAAGCTGTCAGGGTGGGCCAGATGTCCATCAACCAGGCAGCGATCCACTACAACCTGCCGTACTCCTCGCTCTACGGGAGATTCAAGAGGTGCAAGTATCAGATGCAGGGTGTCCCACAAAATCAGCAGCAACCACATCTAGATCCCCACAAAATGGAGCAAGAGCACCAACCGCACGAGGTGCAACAGTACTGCCAGCAGGTACCATCCCACCAGGAACCGGACCCGCACACATACGCCCGCATGCACGAATATACTCACCAAGAGCAGTACGCACAGTACTACCAGGGTTTTAACAGTATTGCGACTAGCTGA
- Protein Sequence
- MAGKVGQHHVEDGGKSLITPRRRCREKLVNTTKKMAGKAGQHHVEDGEKSWSTPRRRWREMPGHGLSRVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERAESPPATTLETLESAPHNAKSTSLLVRHMEFMNVTEVPDSADFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQGSPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGVPQNQQQPHLDPHKMEQEHQPHEVQQYCQQVPSHQEPDPHTYARMHEYTHQEQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -