Ogra005514.1
Basic Information
- Insect
- Orthosia gracilis
- Gene Symbol
- -
- Assembly
- GCA_947562075.1
- Location
- OX387267.1:44246230-44256712[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-11 8e-09 35.8 0.0 4 39 148 184 145 188 0.89 2 4 8.3e-11 3.7e-08 33.7 0.3 2 39 200 237 199 241 0.92 3 4 3.7e-14 1.6e-11 44.5 0.0 2 45 255 299 254 299 0.96 4 4 4.6e-18 2e-15 57.0 0.1 1 43 306 349 306 351 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCGCAAGTGAAATGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCACAGTTCGCGCACAGTTATCTATCCAGTCAGGGCAGTGGCTTGGAGGAGCTCGCACCGCTGGCGCCGGCGGGCCCAGCTGCCACGCCGGTGTGTGTCAAGCAAGAGCGAGCTGAGTCCCCACCAGCTACCACTTTGGAGACACTCGAGTCGGCTCCACATAATGCTAAGGGTACCTCACTGTTGGACCGTCACATAGACTTTATGAAAGTCACCGAAGTGCCTGACTCCACCGACTTCATGCCGCTGCTGACTGTCAAGGATGAACCCTCGTCTGAAGGCGAACAACCACATCTTAGCGGTGAAGACACAAATGACTCCTGCGGCCGACAAGAATCGCCCGCACTGCGACACAGCCCTAAGAGCTGGACCCAGCACGATATGGAACAAGCCTTGGATGCTCTCAGGAACCACCAGATGAGCCTTACCAAGGCATCAGCAACGTACGGCATTCCGTCCACCACCCTCTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGAAGGCGCCGCCAAGTCCTGGAGCGAGGCTGACCTGCGAGGGGCTCTGCATGCGCTGAGGGCGGGCGCTATCTCTGCTAACAAGGCCAGTAAGGCGTATGGCATTCCCAGTAGCACATTGTACAAGATAGCTCGTCGCGAGGGCATCCGTCTGTCGGCGCCATTCAACGCAGCGCCCACGGCGTGGCGCCGCGCCGACCTGCAGCTGGCGCTGGCGTCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGGGCTGCAACGCAATATGGGATACCTACAGGAACGCTGTATGGGCGGTGTAAGCGAGAGGGGATCGAGCTGTCCCGCTCTAACCCCACGCCGTGGTCCGAAGACGCCATGGGAGAAGCGCTTGAAGCTGTCAGAGTGGGGCAGATGTCCATAAACCAGGCGGCGATCCACTACAACCTGCCGTACTCCTCACTCTACGGGAGATTCAAGAGGTGCAAGTATCAGATGCAGAGTGTCCCACAAAACCATCAGCAGCCACAGCAAGACCCCCACAATGTGGAGCAAGAGCACCAACCCCACGAGTTGCATCAGTACTACCACCAGGTGCCATCCCATCAGGAGTCGGACCCACACACATACGCCCACATGCACGAGTATAATCACCAAGACCAGTATGCACAGTATTACCAGGGTTTTAACAGTATAGCGACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERAESPPATTLETLESAPHNAKGTSLLDRHIDFMKVTEVPDSTDFMPLLTVKDEPSSEGEQPHLSGEDTNDSCGRQESPALRHSPKSWTQHDMEQALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQSVPQNHQQPQQDPHNVEQEHQPHELHQYYHQVPSHQESDPHTYAHMHEYNHQDQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -