Amun027299.1
Basic Information
- Insect
- Anorthoa munda
- Gene Symbol
- -
- Assembly
- GCA_945859655.1
- Location
- CAMAOM010000491.1:1461478-1476435[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-11 1.7e-08 35.2 0.0 4 39 147 183 144 187 0.89 2 4 8.1e-11 4.7e-08 33.7 0.3 2 39 199 236 198 240 0.92 3 4 3.6e-14 2.1e-11 44.5 0.0 2 45 254 298 253 298 0.96 4 4 4.5e-18 2.6e-15 57.0 0.1 1 43 305 348 305 350 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCGCAAGTGAAATGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCGCAGTTCACGCACAGTTATCTATCTAGCCAGGGCAGTGGCTTGGAAGAGCTGGCACCGCTGGCGCCGGCGGGCCCAGCCGCCACGCCGGTGTGTATCAAGCAAGAGCGAGCTGAGTCCCCACCAGCTACCACGTTGGAGACGCTCGAGTCGGCTCCACATAATGCCAAGGGTACCTCTCTGTTGGATCGTCACATAGACTTTATGAACGTCACCGAAGTGCCTGATTCCACCGACTTCATGCCGCTGCTGACTGTCAAGGATGAACCCTCGTCTGAAGGCGAACAACCACATCTTAGCGGTGAAGACACAAATGACTCCTGCGTCCGGCAAGCGTCGCCCGCGCGACACAGCCCTAAGAGCTGGACCCAGCATGACATGGAACAGGCCTTGGATGCTCTCAGGAGCCACCAGATGAGCCTTACCAAGGCATCAGCAACGTACGGCATTCCGTCCACCACGCTCTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGAAGGCGCCGCTAAGTCCTGGAGCGAGGCTGACCTGCGAGGGGCTCTGCATGCGCTGAGGGCTGGCGCTATCTCCGCAAACAAGGCCAGCAAAGCTTATGGCATTCCCAGCAGCACACTGTACAAGATAGCTCGTCGCGAGGGCATCCGTCTCTCGGCGCCATTCAACGCAGCGCCCACCGCGTGGCGCCGCGCCGACTTGCAGCTGGCGCTGGCGTCCATCCGTTGCGGCGCCAGCTCCGTGCAGCGGGCTGCAACGCAATATGGGATACCTACAGGAACGCTGTATGGTCGGTGTAAGCGAGAGGGGATCGAGCTGTCCCGCTCCAACCCCACGCCGTGGTCCGAAGACGCCATGGGAGAAGCGCTTGAAGCTGTCAGAGTGGGGCAGATGTCCATAAACCAAGCGGCGATCCACTACAACCTGCCGTACTCCTCACTCTACGGAAGATTCAAGAGGTGCAAGTATCAAATGCAGAGTATCCCACAAAATTATCAGCAGCCACAGCAAGACCCCCAAAAAGTGGAGCAAGAGCACCAACCCCACGAGGTGCATCAGTACTACCACCAGGTGCCATCCCATCAGGAGTCGGATCCACACACATACGCCCACATGCACGACTATAATCACCAAGACCAGTATGCACAGTACTACCAGGGTTTTAATAGTATAGCGACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFTHSYLSSQGSGLEELAPLAPAGPAATPVCIKQERAESPPATTLETLESAPHNAKGTSLLDRHIDFMNVTEVPDSTDFMPLLTVKDEPSSEGEQPHLSGEDTNDSCVRQASPARHSPKSWTQHDMEQALDALRSHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQSIPQNYQQPQQDPQKVEQEHQPHEVHQYYHQVPSHQESDPHTYAHMHDYNHQDQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -