Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.9e-12 1.9e-09 37.8 0.0 4 39 71 107 68 111 0.90

2 4 3.3e-12 1.6e-09 38.0 0.3 2 39 123 160 122 164 0.93

3 4 2.5e-14 1.2e-11 44.8 0.0 2 45 178 222 177 222 0.96

4 4 3.1e-18 1.5e-15 57.3 0.1 1 43 229 272 229 274 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.9e-12	1.9e-09	37.8	0.0	4	39	71	107	68	111	0.90
2	4	3.3e-12	1.6e-09	38.0	0.3	2	39	123	160	122	164	0.93
3	4	2.5e-14	1.2e-11	44.8	0.0	2	45	178	222	177	222	0.96
4	4	3.1e-18	1.5e-15	57.3	0.1	1	43	229	272	229	274	0.95

Coding Sequence: ATGAGCGCGTCCCTGTTGGATCGTCACATGGAATTCATGAACGTCACCGAAGTGCCTGACTCCGCTGACTTCATGCCGCTGCTGACTGTGAAGGATGAACCCTCGTCCGAAGGAGAACAAGCACATCTTAGCGGTGAAGACACAAGCGACTCCTGCGGTCGGCAAGCCTCGCCCGCGCCGCGACACAGCCCCAAGAGCTGGACCCAGCATGACATGGAGCGGGCTTTGGACGCTCTCAGGAACCACCAGATGAGCCTTACGAAGGCATCAGCAACGTACGGCATTCCGTCCACCACGCTGTGGCAGCGCGCGCACCGACTGGGCATCGACACGCCCAAGAAGGAGGGCGCCGCGAAGTCGTGGAGCCCGGCCGACCTGCGCGCCGCCCTGCACGCGCTGCGGGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCATACGGCATTCCCAGCAGCACTCTATACAAGATAGCTCGGCGCGAGGGCATCCGGCTGTCGGCGCCATTTAACGCAGCGCCCACCGCCTGGCGCCGCGCCGACCTGCAGCTGGCACTCGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGAACGCTGTATGGTCGGTGTAAGCGAGAAGGTATCGAGCTGTCTCGCTCCAACCCCACGCCGTGGTCCGAAGACGCCATGGGTGAAGCACTCGAAGCTGTCAGGGTGGGACAGATGTCCATCAACCAGGCTGCGATACACTACAACCTGCCGTATTCTTCTCTGTACGGACGGTTCAAGAGGTGCAAATATCAGATGCAGAGTGTCCCACAAAATCAACAGCAACCTCAGCAAGATCACCACAAAATGGAGCACGAGCAGCAACCGCACGAGCTGCAGCAGTACTACCAGCACCAGCATGTACCACCCCACCAGGAGCCGGACCCGCACACATACGCCCACATGCACCAGTACACTCATACCCACGACCAGTACGGACATGGGCAGTACTATCAGGGTTTTAACAGTATTGCGACCAGCTGA
Protein Sequence: MSASLLDRHMEFMNVTEVPDSADFMPLLTVKDEPSSEGEQAHLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSPADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQSVPQNQQQPQQDHHKMEHEQQPHELQQYYQHQHVPPHQEPDPHTYAHMHQYTHTHDQYGHGQYYQGFNSIATS

Sequence clustering based on sequence similarity using MMseqs2