Nfim023047.1
Basic Information
- Insect
- Noctua fimbriata
- Gene Symbol
- -
- Assembly
- GCA_905163415.1
- Location
- LR990941.1:843102-850533[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.7e-12 9.2e-09 35.8 0.0 4 39 148 184 145 188 0.89 2 4 5.4e-12 8.6e-09 35.9 0.2 4 39 202 237 199 241 0.92 3 4 1.2e-14 1.9e-11 44.4 0.0 2 45 255 299 254 299 0.96 4 4 1.5e-18 2.3e-15 56.9 0.1 1 43 306 349 306 351 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGCCTGTCGCAAGTGAAATGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCACAATTCGCGCACAGTTATCTATCCAGTCAGGGCAGTGGCTTGGAGGAGCTGGCACCGTTGGCGCCGGCGGGCCCGGCTGCCACACCGGTGTGTGTCAAGCAGGAGCGAGCGGAGTCTCCACCAGCCACCACGCTGGAGACACTCGAGTCAGCGCCACATAATGCCAAGAGCGCATCCCTGTTGGATCGTCACATGGAATTTATGAACGTCACCGAAGTGCCTGACTCCACTGACTTCATACCGCTTCTGGCTGTGAAGGATGAACCCTCGTCCGAAGGTGAACAACCGCATCTTAGCGGTGAAGACACAAGCGACTCCTGCGGCCGGCAAGCCTCGCCCGCGCCGCGACACAGCCCCAAGAGCTGGACCCAGCACGACATGGAGCAGGCTTTGGACGCTCTCAGAAACCACCAGATGAGCCTTACGAAGGCATCAGCAACGTACGGCATTCCGTCCACCACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCCTGGAGCGAGCCCGACCTGCGCGCCGCGCTGCACGCGCTCAGGGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCTTATGGCATTCCTAGCAGCACACTATACAAGATAGCTCGGCGAGAGGGCATCCGGCTATCGGCTCCCTTCAACGCAGCTCCTACCGCCTGGCGCCGCGCCGACCTGCAGCTGGCGCTCGCGTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGCGCCGCCACGCAGTATGGGATACCTACAGGAACGCTGTATGGTAGATGTAAGCGAGAAGGTATCGAGCTGTCTCGCTCCAACCCCACGCCGTGGTCCGAAGATGCCATGGGCGAAGCTCTGGAAGCTGTCAGGGTGGGGCAGATGTCTATCAACCAGGCTGCGATCCACTACAACCTGCCGTATTCTTCTCTGTACGGACGGTTCAAGAGGTGCAAGTATCAGATGCAGAGTGTCCCACAAAACCATCAGCAACCACAGCAAGATCCTCACAAAATAGAGCAAGAACAGCAACCGCACGAGTTGCAGCACTACTACCAGCATCACCAGGCACCACCACACCAAGAGCCGGAGCCGCACACATACGCCCACATGCACGAGTACACTCACACCCACGACCAGTACGGACAGGGGCAGTACTATCAGGGTTTTAACAGTATTGCGACCAGCTGA
- Protein Sequence
- MPGYGLSQVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERAESPPATTLETLESAPHNAKSASLLDRHMEFMNVTEVPDSTDFIPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQHDMEQALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEPDLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQSVPQNHQQPQQDPHKIEQEQQPHELQHYYQHHQAPPHQEPEPHTYAHMHEYTHTHDQYGQGQYYQGFNSIATS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -