Tni000777.1
Basic Information
- Insect
- Trichoplusia ni
- Gene Symbol
- -
- Assembly
- GCA_003590095.1
- Location
- NC:19345667-19355321[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.3e-13 9.9e-10 37.7 0.0 4 39 148 184 145 188 0.89 2 4 1.2e-11 1.6e-08 33.8 0.3 2 39 200 237 199 241 0.92 3 4 1e-16 1.4e-13 50.1 0.3 2 45 255 299 254 299 0.96 4 4 7.6e-19 1e-15 56.9 0.0 1 42 306 348 306 350 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCTCAAGTGAAATGCGAGCCGCAATCGGACGAAGACGACAGCGACCCACAGTTCGCGCACACCTATCTAAACAGCCAGGGCAATGGGTTGGAGGAGCTGGTGCCGCTGGCGCCGGCGGGCCCGGCCGCCACGCCTGTCTGCGTCAAGCAGGAGCGCGCCGACTCGCCGCCGACCTCCACGCTTGAAACCCTCGAGTCAGCCCCGCACAATGCTAAGaGTGCCGACCTCCTGGACAGGCACTTAGACTTCCTGCACGTGTGTGACATGCAGGACTCGACGGACTTCATGCCGCTGCTCGCAGTCAAGGATGAGCCCTCGTCTGAAGGAGAGCAACCCCACCTGAGTGGCGAGGACACAAGCGACTCATGCGGGCGACAAGCATCGCCCGCACCGCGGCACAGCCCCAAGAGCTGGACGCAACAGGACATGGAGCGGGCTCTCGACGCGCTCAGGAACCATCAGATGAGCCTTACTAAGGCATCTGCGACATACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCACACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGGCGCCAAGTCCTGGAGCGAGGCCGACCTGCGCGGGGCCCTGCACGCGCTCCGGGCCGGCGCCATCTCCGCTAATAAGGCCAGCAAAGCGTATGGCATCCCGAGCAGCACGCTGTACAAGATAGCCCGGCGCGAGGGCATCCGGCTGTCGGCCCCGTTCAACGCGGCGCCGGTGTCGTGGCGGCGCGCGGACctggcggcggcgctggcggccaTCCGCGCCGGCGCCGCCTCCGTGCAGCAGGCCGCCGCGCTCTACGGGATACCCACCGGCACGCTGTACGGGAGGTGCAAGCGAGAGGGTATCGAGTTGTCTCGCTCCAACCCCACGCCGTGGTCCGAGGACGCTATGGGAGAAGCGCTAGAAGCTGTCAGGGTAGGCCAGATGTCCATAAACCAGGCGGCAATTCACTACAACTTGCCGTATTCCTCGCTTTATGGAAGATTCAAGCGATGCAAATATCAGATGCAGGGCATGGCTCCGTGCCCGCAGCCGCCGCCCGAGCGGGAGCAGTGCCAGCCGACGCCCGCCGCCCCGCAGTActgggcggcgggcgcggggctgCCCCACGACCAGTACGCGCACTACTACCACGCGGGCAGCAGCATCGCCACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPQSDEDDSDPQFAHTYLNSQGNGLEELVPLAPAGPAATPVCVKQERADSPPTSTLETLESAPHNAKSADLLDRHLDFLHVCDMQDSTDFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQQDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGGAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPVSWRRADLAAALAAIRAGAASVQQAAALYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGMAPCPQPPPEREQCQPTPAAPQYWAAGAGLPHDQYAHYYHAGSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- -
- 80% Identity
- -