Hvir000579.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- -
- Assembly
- GCA_002382865.1
- Location
- NWSH01000092.1:287027-294115[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.8e-08 1.5e-05 24.3 0.3 4 39 148 190 145 194 0.82 2 4 3.2e-11 1.8e-08 33.7 0.3 2 39 206 243 205 247 0.92 3 4 2.7e-15 1.5e-12 46.8 0.1 2 45 261 305 260 305 0.96 4 4 2.3e-18 1.3e-15 56.6 0.0 1 42 312 354 312 356 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGTCACGGATTGTCTCAAGTGAAATGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCACAATTCGCGCACAGTTATCTATCCAGTCAGGGTAGTGGTTTGGAGGAGCTGGTCCCGCTGGCTccggccgcgcccgccgccaCGCCAGTCTGTGTGAAGCAGGAGCGCGCAGAGTCACCACCAGCTGTCACGCTAGAGACTCTTGAGTCTGCACCTCATAATGCCAAGAGCACATCACTGCTGGATCGTCACATGGAATTTATGAACGTCAGCGAAGTTCCCGACTCCACTGACTTCATGCCGCTACTGGCAGTCAAGGATGAACCCTCTTCTGAAGGTGAACAACAACACCTCAGTGGCGAAGACACGAGCGACTCGTGCGGTAGACAAGCGTCGCCCGCGCCCCGACACAGCCCGAAGAGCTGGACGCAGCACGACATGGAGAGAGCACTCGAAGCCCTCAGGTCGCACCAGATGAGCCTCACTAAGTATTTAAAATGTCCCAAGGCATCAGCAACATACGGCATTCCGTCGACGACTCTGTGGCAGCGCGCGCACCGACTGGGCATCGACACGCCGAAGAAGGAAGGCGCCGCCAAGTCCTGGAGCGAGGCAGACCTGCGTGGAGCACTGCATGCCCTGAGAGCCGGCGCTATCTCTGCTAATAAAGCCAGTAAGGCTTATGGCATCCCAAGCAGCACGCTGTACAAGATAGCGCGTCGCGAGGGTATCCGTCTGTCGGCGCCGTTCAACGCGGCGCCGACGGCGTGGCGGCGCGCCGACCTGCAGCTGGCGCTCGCCGCCATCCGCGCCGGCAGCAGCTCCGTGCAGCGCGCCGCCACCACCTACGGCATACCCACCGGAACCCTGTACGGGCGGTGCAAACGGGAAGGCATCGAGCTGTCTCGCTCCAACCCCACGCCCTGGTCCGAAGACGCGATGGGGGAAGCACTCGAGGCAGTGCGTGTGGGCCAGATGTCTATCAACCAGGCTGCTATTCACTACAACCTGCCTTACTCCTCTCTCTACGGCAGATTCAAGCGGTGCAAGTATCAGATCCAGGGTGTCCCTCAAACCCAACAACCACAACAAGACATTCAAAACCTGGAGGCAGAACAACCCCACGAGGTCCCACAGTACTACCACCAGTTACCCCCACACCAGGAACCTGACCCACACACGTATACACACATGCACGAGTACACCCACCCACACGACCAGTACGGCCAGTACTACCAAGGCTTCAACAGTATCGCTACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELVPLAPAAPAATPVCVKQERAESPPAVTLETLESAPHNAKSTSLLDRHMEFMNVSEVPDSTDFMPLLAVKDEPSSEGEQQHLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALEALRSHQMSLTKYLKCPKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALAAIRAGSSSVQRAATTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQIQGVPQTQQPQQDIQNLEAEQPHEVPQYYHQLPPHQEPDPHTYTHMHEYTHPHDQYGQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -