Alyc030856.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796866.1:23934682-23943078[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.7e-11 2.9e-08 34.7 0.0 4 39 148 184 145 188 0.90 2 4 1.3e-10 5.7e-08 33.7 0.3 2 39 200 237 199 241 0.92 3 4 5.8e-14 2.5e-11 44.5 0.0 2 45 255 299 254 299 0.96 4 4 8.2e-18 3.6e-15 56.8 0.0 1 42 306 348 306 350 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGGCTGTCGCAAGTGAAATGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCACAATTCGCGCACAGTTATCTATCCAGTCAGGGCAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCTGCCACGCCAGTGTGTGTGAAGCAGGAGCGAGCCGAGTCACCACCAGCTACCACGCTTGAGACGCTCGAGTCAGCACCACATAATGCCAAGAGCACGTCCCTGTTGGTTCGTCACATGGAGTTCATGAACGTCACCGAAGTGCCTGACTCCACTGACTTCATGCCGCTGCTGGCTGTCAAGGATGAACCCTCGTCCGAAGGTGAACAACCACATCTTAGCGGCGAAGACACGAGCGACTCCTGTGGCCGGCAAGCTTCGCCCGCGCCACGACACAGCCCCAAGAGTTGGACCCAGCACGACATGGAACGAGCTTTGGATGCTCTCAGAAACCACCATATGAGTCTTACAAAGGCATCAGCAACCTACGGAATTCCGTCCACCACACTCTGGCAGCGAGCCCACCGGCTCGGCATCGACACGCCAAAGAAGGAAGGAGCGGCCAAGTCCTGGAGCGAGGCCGATTTGCGAGGGGCACTGCATGCCTTGAGGGCAGGTGCTATCTCCGCTAATAAGGCCAGCAAAGCTTATGGCATTCCCAGCAGCACTCTATACAAGATAGCTCGCCGGGAAGGCATCCGCTTGTCAGCGCCGTTCAACGCGGCGCCCACCGCGTGGCGCCGCGCCGACCTGCAGCTGGCGCTGGCGTCCATCCGCTGCGGCGCCAGCTCCGTCCAGCGTGCTGCCACGCAGTATGGGATACCTACAGGAACACTGTATGGTCGGTGTAAGCGAGAGGGCATCGAGCTGTCTCGATCCAACCCCACGCCGTGGTCTGAAGACGCCATGGGCGAAGCACTCGAAGCCGTCAGGGTGGGCCAGATGTCCATCAACCAGGCAGCCATCCACTACAACCTGCCGTACTCGTCGCTCTACGGGAGATTCAAGAGGTGCAAGTATCAGATGCAGGGTGTTCCACAAAACCAGCAGCAACCACAGCAAGATCCCCACAAAATGGAGCAAGAGCACCTTACTCACGAGGTGCAACAGTACTACCACCAGGTACCATCCCACCAGGAACCGGACGTACACACATACGCCCACATGCACGAATATAATCACCAAGAGCAGTACGCACAGTACTACCAGGGTTTTAACAGTATTGCGACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERAESPPATTLETLESAPHNAKSTSLLVRHMEFMNVTEVPDSTDFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGVPQNQQQPQQDPHKMEQEHLTHEVQQYYHQVPSHQEPDVHTYAHMHEYNHQEQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -