Apsi010069.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- -
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000033.1:609209-619294[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-12 1.6e-09 37.5 0.0 4 39 148 184 145 188 0.90 2 4 3.2e-11 3.4e-08 33.2 0.2 3 39 201 237 199 241 0.91 3 4 1.2e-15 1.3e-12 47.4 0.1 2 45 255 299 254 299 0.96 4 4 1.2e-18 1.3e-15 57.0 0.0 1 43 306 349 306 351 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGACTGACTCAAGTGAAATGCGAACCACTCTCCGACGAAGAAGACAGCGACTCACAATTCGCGCACAGTTATTTATCCAGTCAGGGTAGTAGTTTGGAGGAGTTGGTACCGCTGGCGCCGGCGGGCCCTGCCGCCACGCCAGTGTGCGTCAAGCAGGAGCGTGCTGACTCCCCACCGACTACAACCCTCGAAACGCTAGAGTCAGCACCACATAACGCTAAGAGCACTTCACTGCTGGGCCGTCATTTGGAATTTATGAACGTAAACGAAGTTCCCGATTCCACTGACTTCATGCCACTACTAGCTGTCAAAGATGAACCCTCGTCCGAAGGAGAACAGCCACAACTTAGTGGAGAAGACACAAGCGACTCATGTGGTCGACAAGCCTCGCCCGCGCCACGACACAGCCCCAAGAGTTGGACCCAACACGACATGGAGCGAGCTTTGGACGCGCTGCGAAACCATCAGATGAGCCTCACTAAGGCATCAGCGACCTACGGCATACCGTCGACGACTCTGTGGCAGCGCGCGCACCGCTTGGGAATCGACACGCCCAAGAAAGAGGGCGCCGCCAAGTCCTGGAGCGACGCCGACCTGCGCGGGGCCCTGCACGCGCTCAGGGCCGGTGCTATCTCTGCTAATAAGGCCAGCAAGGCGTATGGTATTCCGAGCAGCACTCTGTACAAGATAGCGCGGCGGGAAGGCATCCGGCTGTCGGCGCCGTTCAACGCGGCGCCGACGACGTGGCGGCGCGCCGACCTGCAGCGCGCGCTGGCCGCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCCGCCGCGCACTACGGGATACCCACCGGAACTCTATACGGCAGGTGTAAACGTGAAGGCATCGAGCTTTCTCGCTCCAACCCCACACCCTGGTCGGAAGACGCCATGGGTGAAGCGCTCGAGGCCGTCAGGGTGGGCCAGATGTCTATCAACCAGGCCGCGATCCACTACAACCTGCCGTACTCTTCGCTCTACGGGAGGTTCAAGAGGTGCAAATATCAGATGCAGGATGTCACCCAAAATCTGCAGCCCGCGCATCAAGATCCTCAAGAGCAGCAACCCCACGAGGTGCAGTACCACCCCCAGGTGCCCCCCCTCGAGCCGGAGTTCACGTACACACACGCGCAGGAGTACACACACACATACGATCAGTACGGACCGTACTACCAGAGTTTCAACGGTATTGCTACCAGCTGA
- Protein Sequence
- MPGYGLTQVKCEPLSDEEDSDSQFAHSYLSSQGSSLEELVPLAPAGPAATPVCVKQERADSPPTTTLETLESAPHNAKSTSLLGRHLEFMNVNEVPDSTDFMPLLAVKDEPSSEGEQPQLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSDADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTTWRRADLQRALAAIRCGASSVQRAAAHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQDVTQNLQPAHQDPQEQQPHEVQYHPQVPPLEPEFTYTHAQEYTHTYDQYGPYYQSFNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_01377388;
- 80% Identity
- -