Cinc012690.1
Basic Information
- Insect
- Chrysodeixis includens
- Gene Symbol
- -
- Assembly
- GCA_941860345.1
- Location
- OW796105.1:1149337-1158473[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.1e-12 5.3e-09 36.0 0.0 4 39 148 184 145 188 0.89 2 4 2.4e-12 2.1e-09 37.3 0.5 2 39 200 237 199 241 0.93 3 4 4.5e-15 3.9e-12 46.0 0.1 2 45 255 299 254 299 0.95 4 4 1.9e-18 1.6e-15 56.8 0.0 1 42 306 348 306 350 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCTCAAGTGAAATGCGAGCCGCTCTCGGACGAAGAAGACAGCGACTCACAGTTCGCGCACACCTATCTATCCGGCCAGGGCAGCGGGCTGGAGGAGCTGGCCCCGCTGGCGCCGGCGGGCCCGGCCGCCACGCCCGTCTGCGTCAAGCAGGAGCGCGCCCACTCGCCGCCCGCCGCCACGCTCGAGACCCTCGAGTCAGCGCCGAGCAATGCCAAGAGTACGGACCTGCTGGACAGACACCTGGACTTTATGCATGTGTGCGACATGCAGGACTCCACAGACTTCATGCCACTGCTGGCTGTCAAGGATGAACCCTCGTCTGAAGGAGAGCAACCCCACCTAAGCGGCGAGGACACAAGCGACTCGTGCGGACGACAGGCATCGCCCGCGCCGCGCCACAGCCCCAAGAGCTGGACGCAGCAGGACATGGAGCGAGCCCTCGACGCGCTCAGGACCCATCAGATGAGCCTCACCAAGGCGTCAGCCACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGTCGCCAAGTCCTGGAGCGAGGCCGACCTGCGCGCCGCACTGCACGCGCTCAGGGCAGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCTTACGGCATCCCGAGCAGCACGCTGTACAAGATAGCGCGTCGCGAGGGCATCCGGCTGTCGGCGCCGTTCAACGCGGCGCCGGTGTCGTGGCGGCGCGCGGACCTGTGCGCCGCGCTGGCCGCCATCCGCGCCGGCGCCGCGTCTGTGCAGCGCGCCGCCGCGCTCTACGGGATACCCACCGGCACATTGTATGGGAGGTGCAAGCGAGAGGGCATCGAGTTGTCCCGCTCTAACCCCACGCCTTGGTCGGAGGACGCTATGGGAGAAGCGCTAGAGGCTGTCAGAGTGGGCCAGATGTCTATAAACCAGGCGGCAATCCACTACAACTTGCCTTACTCCTCGCTGTATGGGAGATTCAAGAGGTGCAAATATCAGATGCAGGGCATGCCTCCAGGCCAGCAGCTGCCGCCGCCCGAGCTGAAGCTGGAAGAGCAGCAGGCGGGCGACGTCCCGCAGTACTTCCCTCTGGGCGGCGAGCAGGACACACAGCTGGGTGTGGCGGGCTACACACACGAGCAGTACGCGCAGTACTACGGCGGCTTCACCGGCATCGCCACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHTYLSGQGSGLEELAPLAPAGPAATPVCVKQERAHSPPAATLETLESAPSNAKSTDLLDRHLDFMHVCDMQDSTDFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQQDMERALDALRTHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGVAKSWSEADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPVSWRRADLCAALAAIRAGAASVQRAAALYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGMPPGQQLPPPELKLEEQQAGDVPQYFPLGGEQDTQLGVAGYTHEQYAQYYGGFTGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- -
- 80% Identity
- -