Aoxy003315.1
Basic Information
- Insect
- Allophyes oxyacanthae
- Gene Symbol
- -
- Assembly
- GCA_932294395.1
- Location
- CAKOAO010000040.1:2053063-2061894[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-12 1.4e-09 37.9 0.0 4 39 144 180 141 184 0.90 2 4 3.2e-11 2.8e-08 33.8 0.3 2 39 196 233 195 237 0.92 3 4 5e-15 4.4e-12 45.9 0.1 2 45 251 295 250 295 0.96 4 4 2e-18 1.8e-15 56.8 0.0 1 42 302 344 302 346 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGACTGTCTCAAGTGAAATGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCACAATTCGCGCACAGTTATCTATCCAGTCAGGGTAGTGGCCTCGAGGAGTTGGTGCCGCTGGCGCCGGCGGGCCCGGCTGCCACGCCGGTGTGCGTCAAGCAGGAACGCGCGGACTCCCCGCCCGCTGCCACGCTTGAGACGCTAGAGTCAGCACCACATAATGTTAAGAGCACGATACTGTCGGAGTTTATGAACCTGAGCGAAGGGCTTGACTCCACAGACTTCATGCCGCTGCTGTCCGTCAAAGATGAACCCTCGTCTGAAGGTGAGCTACCGCACCTTAGTGGTGACGACACGAGCGACTCATGCGGTCGACAAGCTTCGCCCGCACCTCGACACAGCCCAAAGAGTTGGACCCAACACGACATGCAACGAGCGCTGGATGCGCTACGGAACCATCAGATGAGCCTCACCAAGGCATCAGCAACGTACGGCATACCGTCCACAACCCTTTGGCAGCGAGCACACCGGCTGGGCATCGACACGCCCAAGAAGGAAGGCGCTGCCAAGTCCTGGAGCGAAGCGGACCTGCGCGGAGCACTGCATGCGCTAAGGGCTGGCGCAATCTCTGCCAACAAGGCCAGCAAGGCTTAtgGCATACCAAGCAGCACACTGTACAAGATAGCGCGTCGAGAAGGCATCCGACTGTCCGCGCCCTTCAACGCCGCACCCACCGCCTGGCGCCGCGCTGACCTGCAGCTGGCGCTGGCGGCCATCCGCTGCGGAGCCAGCTCCGTGCAGCGGGCCGCCACACAGTACGGGATACCCACTGGCACGCTGTACGGGCGCTGCAAGCGGGAGGGCATCGAGCTGTCGCGCTCCAACCCCACGCCCTGGTCCGAGGACGCCATGGGAGAGGCGCTAGAAGCTGTCAGAGTGGGTCAGATGTCCATAAACCAGGCGGCGATCCACTACAACCTGCCGTACTCCTCGCTCTACGGGAGGTTCAAGAGGTGCAAGTATCAGATGCAGGGCGTCTCGCAGAGCCCGCAACAACCTCAAGATCCTCACAAAGTGGATCACGAACAGCAAGCCCCCGCCGCGCAGCAGTACTACCAGCACGCGCCGGCGCAACACGACGACCCGCACACATACACGCACATGCACGACTACTCACACACGCACGACCAGTACGGACAGTACTACCAGAGCTTCAGCAGTATCGCCACCAGCTGA
- Protein Sequence
- MPGYGLSQVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELVPLAPAGPAATPVCVKQERADSPPAATLETLESAPHNVKSTILSEFMNLSEGLDSTDFMPLLSVKDEPSSEGELPHLSGDDTSDSCGRQASPAPRHSPKSWTQHDMQRALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALAAIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGVSQSPQQPQDPHKVDHEQQAPAAQQYYQHAPAQHDDPHTYTHMHDYSHTHDQYGQYYQSFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_01342135;
- 80% Identity
- -