Sinf032097.1
Basic Information
- Insect
- Sesamia inferens
- Gene Symbol
- -
- Assembly
- GCA_037179545.1
- Location
- CM073939.1:1462863-1489870[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-11 4.2e-09 37.6 0.0 4 39 120 156 117 160 0.90 2 4 2.4e-10 6.1e-08 33.9 0.3 2 39 172 209 171 213 0.92 3 4 1.1e-13 2.7e-11 44.6 0.0 2 45 227 271 226 271 0.96 4 4 4.2e-17 1e-14 55.5 0.0 1 42 278 320 278 322 0.95
Sequence Information
- Coding Sequence
- ATGGTTCTGCAGGGCAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCGGCCACGCCGGTGTGTGTCAAGCAGGAGCGAGCCGACTCACCACCAACTACCACGCTGGAGACGCTCGAGTCAGCGCCACATAATGCGAAGAGCACGTCCCTGCTGGATCGCCACATGGACTTCATGAACGTCACCGAAGTGCCTGACTCCACTGACTTCATGCCACTGCTGGTTGTCAAGGATGAACCCTCGTCCGAAGGAGAACAACCTCAGCTTAGCGGTGAAGACACGAGCGACTCCTGCGGACGGCAGGCTTCGCCCACGTCACGACACAGCCCCAAGAGTTGGACCCAGCATGACATGGAACGAGCTTTGGATGCTCTCAGAAACCACCAGATGAGCCTTACGAAGGCATCAGCAACCTACGGCATTCCGTCTACCACGCTTTGGCAGCGAGCCCACCGGCTGGGCATCGACACGCCAAAGAAGGAAGGAGCGGCCAAGTCCTGGAGCGAGGCTGATTTGCGAGGGGCTCTGCATGCCTTGAGGGCAGGCGCTATTTCTGCTAATAAAGCCAGCAAAGCTTACGGTATTCCCAGCAGTACACTTTACAAGATAGCTCGTCGGGAAGGCATTCGCCTCTCGGCGCCCTTCAACGCGGCGCCTACCGCGTGGCGCCGCGCCGACCTGCAGCTGGCGCTCGCTTCCATTCGCTGCGGCGCCAGCTCTGTGCAACGCGCTGCCACGCAGTATGGGATTCCTACAGGAACGCTATACGGACGGTGCAAGCGAGAGGGAATCGAGCTATCTCGCTCCAATCCCACACCGTGGTCTGAAGATGCCATGGGTGAAGCACTCGAAGCTGTCAGggTGGGCCAGATGTCCATCAACCAAGCAGCGATCCACTTCAACCTGCCGTACTCCTCGCTCTACGGGAGGTTCAAAAGGTGCAAGTATCAGATGCAGGGTGTCCCTCAAAATCAGCACCAACTGCAGCAAGAACCCAACAAAATGGAGCAAGAGCAACATCCTCACGAAGTACCACAGTACTACCACCAGGTACCACCCCACCAAGAACCGGATCCGCACACATATGCTCATATGCACGAATATATTCATCAAGACCAGTACTCACAGTACTACCAGGGTTTTAACAGTATTGCGACCAGCTGA
- Protein Sequence
- MVLQGSGLEELAPLAPAGPAATPVCVKQERADSPPTTTLETLESAPHNAKSTSLLDRHMDFMNVTEVPDSTDFMPLLVVKDEPSSEGEQPQLSGEDTSDSCGRQASPTSRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQGVPQNQHQLQQEPNKMEQEQHPHEVPQYYHQVPPHQEPDPHTYAHMHEYIHQDQYSQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -