Dlon015594.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila longiperda
Gene Symbol
RREB1
Assembly
GCA_035042125.1
Location
JAWNLV010000182.1:367153-374010[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.037 2.5 8.7 0.8 1 21 269 289 269 291 0.93
2 13 0.00035 0.024 15.1 0.2 1 23 301 323 301 323 0.98
3 13 0.00026 0.017 15.5 7.2 1 23 329 351 329 351 0.98
4 13 0.25 17 6.1 1.7 2 20 587 605 587 607 0.93
5 13 0.016 1.1 9.8 0.2 1 23 758 780 758 780 0.97
6 13 5e-06 0.00034 20.9 0.1 1 23 790 812 790 812 0.99
7 13 0.00087 0.058 13.9 2.0 1 23 818 841 818 841 0.97
8 13 0.0031 0.21 12.1 2.0 1 23 1114 1137 1114 1137 0.95
9 13 9e-05 0.0061 16.9 0.3 2 23 1556 1577 1555 1577 0.97
10 13 0.15 10 6.8 6.3 1 23 1583 1606 1583 1606 0.97
11 13 3 2e+02 2.7 3.8 1 23 1725 1748 1725 1748 0.90
12 13 0.0088 0.59 10.7 0.5 3 23 1801 1821 1799 1821 0.96
13 13 0.0014 0.094 13.2 4.8 1 23 1827 1849 1827 1849 0.99

Sequence Information

Coding Sequence
ATGCTcgccacacagcagcagcaacagcagcagcaacaacaacaacaatcgcacacagcagcagcagcagcagcagcaacacttgaGGATGCTCGCGATTTGGGCTTAATGGAGACGCGACAACGTCGCGATTCGAGTACATCTGAATCCTCGCTGGAGCATTTGGATTTGGGTCGGACGCCAAAAaagttgagcagcagcagcggtgcaCCGCAGCCGACGTCGACGCCGCACGACACAGCAGTGACAGCGACGTCGCGCAAGCGGAAACTGcgacagcaacaccagcaccagcagcaacagttgccgctCTCCGATGAggaccagcaccagcagcaacagcaacaacagcagcagcagcagcagctgttggacTCTTCAGCGCAGCGACCGCGTCACAAGCAGCGACGCAGCGCTATTCCTGCCGCCACCAGCGCCAGCATCGTTGTTGACTACAGCGCCAGCGGAGACGCCAGTTCGCTGCGCAAAAAGTTTCGACTGAAtcgcagcagcgccagcagcaatgCTGCCAACGGTGATTTATCCGAGTCTGGCTTTGTCGATGGCAGCGCTCTCAGTGGCTATCTGCttggcgacaacaacaacaacaataacaataataacaacaacaacaataataacaacaacaatattagtagtagtagcagcagcagcgctgtcgctcagtcagcagcagcgttgGCAGCGCAGCATGCGTCAAGCGTTAGCAGCTCGGGCGGCTCCTCGCCACAGGGCCTTTCGAGCGCCGAATCGGGCATCGGCGCCGGTGATGAGCACATGAAATATTTGTGCCCCATCTGTGAGGTCGTCTCGGCCACGCCCCACGAATTCACCAATCACATTCGCTGCCACAACTACGCCAACGGCGACACCGAGAACTTCACCTGCCGCATCTGCTCCAAGGTGCTGTCGTCGGCATCCTCGCTGGATCGGCATGTCCTGGTGCACACTGGCGAGCGTCCGTTCAACTGTCGCTATTGCCACTTGAACTTCACAACCAATGGGAACATGCACCGACACATGCGCACCCACAAGCAACATCAGgcatcgcagcagcagcagcagcagcatcaacagcaacagcagcaacagcagcagcagcagcagcagcaggcacagtcgcagtcgcaacagcagcaacagcgacgccAGCAACATGCTggtggagctggagcagctggcCCCGAATCGGGATCGGCACAGTTGTTGACAATGCGTGCCGAGAGCTATGAGAGTGATGCTAGCTGCTCGACGGATGTGTCCAGTGAGCTGAACagtcacagcagcaacagcaatcaatccaatcacaacaacaatagccacaaaacgaacaacaataacaacaataagaacaacaacaacaacaacaacaacaacattgaggATGAgatggagctggagctggatcAGGATGAGCAGCTAGTGTTGAGCAGCAAACAGCGTCGCCTCAAGGCAGtcctaaacaacaacaatataattaGGGATGAGGAGCACGAGAATCGGGCGGATGATGATTCGGATGTGGAGAGCGTTGATAGTGTTGCCCAGGTGATAACAAGCACACCAGATGTGGCCACATTGCTCGCTTCGGGCGGCACCTCGCCGAGCCACTCGCATTCGGAATCGCATTCACCGCCAATGCTGCTGCAGAGTTGCCCCGCCTGCAATTCGGGTGAATTTGAATCTGTGCCAGCGTTGTGCGCCCATCTGGATGCCGAGCATGCGGACATACCGGCCAAGTGTCGCGAATGCGAGGTGATCTTTGCCACACATCGACAGCTGCAGGCGCACAGCTGTCGTGGATTGCCGCCACTTCTTGGTGTCAGCTCATCGCCACTGCACAAGCAGGAGGAGCACGAattggaggaggaggaggagcagcagcagcaacagcagcagtcggaggagcaccaccaacagcagcacaagcagGAGGAACAGGAGGAACAGGAGGAGCAGCGCGAATGTGAAGATTTCTTCCAGCAGCTGTATCTGAAGAATAAATCGTCAGCAGCGCTGCTGCCGTCTCCGATCAAACATGAGCCGGCGGTTGAGCGACCGGATCTGGCCGACATTCAAAGCATACTCAATATGACCAGTTCCAGCTGCACCTCGAGTTTCCTGCGCAATTTTGAGCAGTCGGTGAACACGCCCTGCTCCAGCCAATATAGCGTCGATGGACGCGATGGCGAGGAGGAGGCCCAGGATGCCTTCACCAATGAGTTCCGCAGAATGAAATTGCGCGGTGAGTTCCCCTGTAAGCTATGCACTGCCGTCTTTCCCAATCTTCGGGCACTCAAGGGCCACAATCGCTACCATCTGTCGGAGGTGGGCGCCTCTGGCCTATTCCGTTGCAACATGTGTCCCTATGCCGTCTCTGACAAGGCGGCGCTTGTGCGGCACATGCGCACCCACAACGGGGATCGGCCCTACGAGTGCGCCGTCTGCAATTATGCGTTCACCACGAAGGCGAACTGTGAGCGCCATTTGCGCAATCGACATGGAAAGACCAGTCGGGATGATGTGAAAAGTGCGATTGTCTACCATCCAGCCGAGGATGCCAGCTGCGAGGAGAACAAATCCCGCTCCGATGCCGATATCCTAACCGAGCTAAGCGGCTATCGCTGTCCAACACCCACAGAGCACAGCTCCTCGGCTAGCTCCTCATCCCAGCTGAAGCACATGTTGCTGGCGGAGCCGACACCGGCCGTAAaggtaacagcaacagcagcagcagcagcagcagcaacaaaatcgaTGCCACAACAACCGCTCAAGATTCAGGTGAAGAGCTTGGATCAGCTGGTGGATAAGCCACAGCCTGCACTCGATCTCAGCATGGATGCGCTAGACTTGAGCAAGAAGCCCGCACAGCTGCTGGCCGAGCAAAGGGAGCAAAGGGAGCAAAGGGAGCAGCTCGAAAGACACGAATTGctcttgcagcagcagcagcaacaacaacaacagcagcaacagcagcagcagcagcagcagcaacaattgtttgGGGCTGGCGATGCAGCTGCTCATTATATGCAGGTGTTGCGCAGCTTCATGCTCCAGCAGCCACCCGGTTTTCCATTCTTTAGTTTTatgccgccaccgccaccaacAGCGGCATCGGTAGCAACATCAGCAGACAAGTCAATGCCAACAAatccaaaagcagcagcagcagcagcagcagcagcaacaattgctgcattGCCACTGTCGCTGCCGGTGCCACTGCCCGCTGGTGGTCCCGTCAAGATGGTCATCAAGAATGGCGTCCTGATGcccaagcagaagcagcgtCGCTATCGCACCGAGCGTCCCTTTGCCTGCGAGCATTGCTCGGCCCGCTTCACGCTGCGCTCCAACATGGAGCGGCACgtgaagcagcagcatccacagTTCTATGCGCATCGCCAGCGACACCGCATCGGTCATCATGTGATGCGTGACCGGGCTGCATCATCCAGTGCTGTCCAAGCGGCAGCCGCTGCtcaggcggcagcagcagcagctgccgcagtaGCAATGAGTAATctcagccagcagcaacagttgcagcagcagcagcaacagcaacagcaacagcaacagcaacagttgcagcattCACATCACGTCCATGCTCCAATTTCGGAGCAGGTCAAATATGCCATTTTGGCGCAGCAATTGAAGGCGCACAAGGATACGGATTTGTTGGAACAGGCATTGGCACATGGCTCCAGCAGTGTTGTCACCAATCCGTTTCTGCGTTtaagctacaacaacaacaacaacaacaacaacagcagcatcggcatcggcaacaagcagcagcaacagttgagcaacaacaatggcaacactTTGGTGCTGGACGATGATGAGCCGCCAAAGCTGATTATTGACGAGGATGATGAGGATGTGGAGGGTGAGGGTGGGGGCGAGGGCGAGGGAGAGGGCGAGGGCGAgtgcgatgatgatgatgatgatgaggaggaggaggaggagcatgAATTTAATATCGATGACGAGGAGCAGGAGGATGAAGAGATGGACTTGGACGAtgagcatcaacagcagcagcagctgccgcacgatgatgatgatgatgatgttgatgatgatgatgatgataatgatgcaacagtcgcagcagcagcagaggcgtcgctgcaacaattgcaagcagcagcaaaggacAAACTGCAATCCAAGCCAATTGAGGCGGCCAAAAAGGCAGCAGAGATCATAATCAAGGCGGGCGAGGAGAAGGCCACCGAGAAGCAGCCGCGTTCCCAATCTCAGTCGAGAGGCGGCAATAAGCTGGCGACGCCAACACCAATGAAAACAATGATTGCACAAGCGGAATCGGTGGCCAAGTCCTTGAAGGAGGTGGCCAGTTCACCGTTCAAGGATGAATCTCAGGATCTGGTGCCGGTGGCCAAACTGGTGGACAATGCGACCAGCAATCAGGTGTCATTCAATAGCTATTTCCGTCCCAGCGACGTGGCCAATCACATGGAGCAGAGCGACGAGGAGGGTCTCGTCGCCAGCGGCAGCGCCAGCGAGAGCAACAATTCCGGCACCGAGGATgtgaccagcagcagcagcagctgcggcaacGATACCAAAAAGAAATCCGCCTACAGCCTGGCACCGAATCGTGTCAGCTGCCCATATTGCCAGCGCATGTTCCCATGGAGCAGCTCGCTGCGCCGCCACATCCTGACGCACACCGGCCAGAAGCCGTTCAAATGCTCCCATTGCCCGCTGCTGTTCACCACGAAGAGCAACTGCGATCGCCATCTGCTGCGCAAGCATGGCAACGTTGAGTCCGCCATGTCTGTCTATGTGCCCACCGAGGATGTTAGCGAACCGATACCGGTGCCCAAGTCCGTTGAGGAGATTGAGCTCGAGGAGCAGCGACGTCGCCAGGCGGCCGAGGCCGAACAGGCCGAACGGGAGCAGCTTGAGCGCCAAAAGGAGCGCGAACGTGAACTGGAATTGGAACGGGAAAGGGAAcgggaacagcaacaattgatACAACAGTTGCGCCAACAAAtggccgctgctgcagcagctgttgctgttgccgttgtcacTGCACCAGCGCATCCACCAGCACCACAGCCACCCCAATCCCCACCAGGCCTGGAGGCAAGCAGTGATCTGCCCTACAAATGCCATCTGTGCGAATTCTCGTTTGGCGATCGGCTGCAGTGTCTCGAGCACATCAAGCAGCTCCATTCGCACGAGTTCGCACTGCTCCTGGCCAAGGGGGCCATTGAGGCGGATGCACAACTGTTGCCAGTGGCTGGTGGCGCCTCGCATTCGGATGATGAGGCTGCCGCTGTTGGCACCAGATCGGGCAAATATCCCGATTATAGCAATCGCAAAGTGATTTGCGCATTTTGCGTGCGTCGCTTTTGGTCAACGGAGGATCTGCGTCGACATATGCGCACCCATTCCGGCGAGCGTCCATTCCAGTGCGAGATCTGCCTGAGGAAGTTCACATTGAAGCACAGCATGCTGCGCCACATGAAGAAGCACAGTGGACGCAGTCACAATGGTGGCGAACTCGATCATCAATCCGATTGTTCCGATGATGAGCAGATGATGCCCTGCTCTCCACCCTCAACGCCAACGcccattaacaacaacaacaacaacaataacaacacttgccagaacaacaacaacaatagcaacaacaacaacaacaacaacaatagcaaacagGTGCTGCGCGAGCTGCTGGGCAAGGCAAACGAGTGGCGAGTGAGTCGCCTGGGTGAGCAGAAGGAGAACATTGccgaggcaacaacaacacccacagcagcaacagcagcagcaacagcaacagctgcagcagcaacagcagcagcagcagcagcggcagcggcagcagcagctgtggccaGTGGCGATCTAATTGGTAATCTGTTGGGGATCAGTGATCAGGGTATACTCAACAAGCTGCTCTCCTCACCAGACGAAGCTGCCAAGCTGCTTGGAGTGGAGAAATAA
Protein Sequence
MLATQQQQQQQQQQQQSHTAAAAAAATLEDARDLGLMETRQRRDSSTSESSLEHLDLGRTPKKLSSSSGAPQPTSTPHDTAVTATSRKRKLRQQHQHQQQQLPLSDEDQHQQQQQQQQQQQQLLDSSAQRPRHKQRRSAIPAATSASIVVDYSASGDASSLRKKFRLNRSSASSNAANGDLSESGFVDGSALSGYLLGDNNNNNNNNNNNNNNNNNNISSSSSSSAVAQSAAALAAQHASSVSSSGGSSPQGLSSAESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLNFTTNGNMHRHMRTHKQHQASQQQQQQHQQQQQQQQQQQQQQAQSQSQQQQQRRQQHAGGAGAAGPESGSAQLLTMRAESYESDASCSTDVSSELNSHSSNSNQSNHNNNSHKTNNNNNNKNNNNNNNNNIEDEMELELDQDEQLVLSSKQRRLKAVLNNNNIIRDEEHENRADDDSDVESVDSVAQVITSTPDVATLLASGGTSPSHSHSESHSPPMLLQSCPACNSGEFESVPALCAHLDAEHADIPAKCRECEVIFATHRQLQAHSCRGLPPLLGVSSSPLHKQEEHELEEEEEQQQQQQQSEEHHQQQHKQEEQEEQEEQRECEDFFQQLYLKNKSSAALLPSPIKHEPAVERPDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSQYSVDGRDGEEEAQDAFTNEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRYHLSEVGASGLFRCNMCPYAVSDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSRDDVKSAIVYHPAEDASCEENKSRSDADILTELSGYRCPTPTEHSSSASSSSQLKHMLLAEPTPAVKVTATAAAAAAATKSMPQQPLKIQVKSLDQLVDKPQPALDLSMDALDLSKKPAQLLAEQREQREQREQLERHELLLQQQQQQQQQQQQQQQQQQQQLFGAGDAAAHYMQVLRSFMLQQPPGFPFFSFMPPPPPTAASVATSADKSMPTNPKAAAAAAAAATIAALPLSLPVPLPAGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAHRQRHRIGHHVMRDRAASSSAVQAAAAAQAAAAAAAAVAMSNLSQQQQLQQQQQQQQQQQQQQLQHSHHVHAPISEQVKYAILAQQLKAHKDTDLLEQALAHGSSSVVTNPFLRLSYNNNNNNNNSSIGIGNKQQQQLSNNNGNTLVLDDDEPPKLIIDEDDEDVEGEGGGEGEGEGEGECDDDDDDEEEEEEHEFNIDDEEQEDEEMDLDDEHQQQQQLPHDDDDDDVDDDDDDNDATVAAAAEASLQQLQAAAKDKLQSKPIEAAKKAAEIIIKAGEEKATEKQPRSQSQSRGGNKLATPTPMKTMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQVSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSSCGNDTKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRQAAEAEQAEREQLERQKERERELELEREREREQQQLIQQLRQQMAAAAAAVAVAVVTAPAHPPAPQPPQSPPGLEASSDLPYKCHLCEFSFGDRLQCLEHIKQLHSHEFALLLAKGAIEADAQLLPVAGGASHSDDEAAAVGTRSGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRSHNGGELDHQSDCSDDEQMMPCSPPSTPTPINNNNNNNNNTCQNNNNNSNNNNNNNNSKQVLRELLGKANEWRVSRLGEQKENIAEATTTPTAATAAATATAAAATAAAAAAAAAAAAVASGDLIGNLLGISDQGILNKLLSSPDEAAKLLGVEK