Doch004190.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila ochracea
Gene Symbol
RREB1
Assembly
GCA_035044125.1
Location
JAWNML010000021.1:20283418-20290383[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.037 2.3 8.7 0.8 1 21 267 287 267 289 0.93
2 13 0.00035 0.022 15.1 0.2 1 23 299 321 299 321 0.98
3 13 0.00026 0.016 15.5 7.2 1 23 327 349 327 349 0.98
4 13 0.24 15 6.2 1.7 2 20 582 600 582 602 0.93
5 13 0.016 1 9.9 0.2 1 23 746 768 746 768 0.97
6 13 1.3e-05 0.0008 19.6 0.7 1 23 778 800 778 800 0.99
7 13 0.00086 0.054 13.9 2.0 1 23 806 829 806 829 0.97
8 13 0.0031 0.19 12.1 2.0 1 23 1106 1129 1106 1129 0.95
9 13 8.9e-05 0.0056 17.0 0.3 2 23 1521 1542 1520 1542 0.97
10 13 0.15 9.5 6.8 6.3 1 23 1548 1571 1548 1571 0.97
11 13 9.7 6.1e+02 1.1 3.4 1 23 1689 1712 1689 1712 0.78
12 13 0.0087 0.55 10.7 0.5 3 23 1776 1796 1774 1796 0.96
13 13 0.0014 0.087 13.2 4.8 1 23 1802 1824 1802 1824 0.99

Sequence Information

Coding Sequence
ATGCTcgccacacagcagcagcagcaacagcagcagcagcaacaacaacaacagcagcaacaagcaactgcagcatcagcagcaacacatgAGGATGCTCGGGATTTGGGGTTAATGGAGACGCGACAACGTCGCGATTCGAGCACCTCAGAATCCTCGCTGGAGCATTTGGATTTGGGTCGCACGCCCAAAaagttgagcagcagcagcggcgcacCGCAGCCGACGTCGACGCCGCACGACACAGCAGTGACAGCGACGTCGCGCAAGCGCAAACTGCGacagcaacaccaccagcagcagcaacagttgccactcTCCGatgaggagcaacagcagcaacagcaacagcagcagcagcagctgttggaCTCATCAGCGCAGCGACCGCGTCACAAGCAGCGACGCAGCgccgttgctgccgctgccagcgCCAGCATCGTTGTCGACTACAGCGCCAGCGGCGACGCCAGCTCGCTGCGCAAAAAGTTTCGACTGAAtcgcagcagcgccagcagcaatgCCGCCAACGGTGATTTATCCGAATCGGGCTTCGTTGATGGCAGTGGCTATCTGcttggcagcaacagcaacaacaacaacaataataataataacagcaacaacaacaacaacaatatcagtaatagtagcagcagcagcgcagtcgctcagtcagcagcagcagcagcgtcggcAGCGCACCATGCGCCAAGCGTTAGCAGCTCGGGCGGCTCCTCGCCACAGGGCCTCTCGAGCGCCGAGTCGGGCATCGGTGCCGGTGATGAGCACATGAAATATCTGTGCCCCATTTGCGAGGTCGTCTCGGCCACGCCCCACGAATTCACCAATCACATTCGCTGCCACAACTACGCCAACGGCGACACCGAGAACTTCACCTGCCGCATCTGCTCCAAGGTGCTGTCGTCGGCATCCTCGCTGGACCGGCATGTCCTGGTGCACACTGGAGAGCGTCCGTTCAACTGTCGCTATTGCCACTTGAACTTCACAACCAATGGGAACATGCACCGACACATGCGCACCCACAAGCAACATCAggcgtcgcagcagcagcagcagcaacagcagcagcactcgcaacagcagcagtccacacaacagcagcaacaggcacagtcgcagcaacaacagcagcgacgccagcagcatgcaggtggagctggagctggagcagctggtTCGGTATCGGGATCAGCACAGTTGTTGACGACGCGAGCGGAGAGCTATGAGAGTGATGCCAGCTGCTCGACGGATGTGTCCAGTGAGCTGAAcagtcacagcagcaacagcaatcagtccaaccacaacaaccacaacaacaacaacaacaacaacaacaatagccacaaaacgaacaacaataacaacaacaatgaggaTGAGCTTGAGCTGGAGGATGAGCAGCTAGTGCTGAGCAGCAAACAGCGACGCCACAAGGCAGccctaaacaacaacaatataattagGGATGAGGAGCACGATAATCGGCCGGATGATGATTCTGATGTGGACAGCGCTGATAGCGTTGCCCAGGTGATAACAAGCACACCGGATGTGGCCACGCTGCTCGCCTCGGGCGGCACCTCGCCGACCCACTCGCATTCGGAATCGCATTcaccgccgctgctgctgcagagcTGCCCGGCCTGCAATTCGGGTGAATTTGAATCTGTGCCAGCGTTGTGCGCCCATCTGGATGCCGAGCATGCGGACATACCGGCCAAGTGTCGCGAGTGTGAGGTGATCTTTGCCACACATCGGCAGCTGCAGGCGCACAGCTGTCGGGGACTGCCGCCGCTGCTTGGTGTGAGCTCATCGCCACTGCACAAGCAGGAGGAGAGCGAactggaggagcagcagcagcacgaggAGGACcacgaacagcagcagcacaagcaggaggaacaggagcaggcTGAACAGCGCGAATGCGAAGATTTCTTCCAGCAGCTGTATCTGAAGAATAAATCGTCAGCAACGCTGCTTCCCTCACCGATCAAACATGAGCCGGCGGATCAGCGACAGGATCTGGCCGATATTCAAAGCATACTCAACATGACCAGTTCCAGCTGCACCTCGAGTTTCCTGCGCAATTTCGAGCAGTCGGTGAACACGCCCTGCTCCAGCCAACATAGCGTCGATGGCCGCGACGGCGAGGAGGAGGCCCAGGATGCCTTCACCAATGAATTCCGCCGCATGAAACTGCGCGGTGAGTTCCCCTGCAAGCTGTGCACCGCCGTCTTTCCCAATCTGCGGGCACTCAAGGGCCACAATCGCTACCATCTGTCGGAGGTGGGCGCCGCCGGTCCATTCCGTTGCAACATGTGTCCCTATGCCGTCTGCGACAAGGCGGCGCTCGTGCGGCACATGCGCACCCACAACGGTGATCGGCCCTACGAGTGCGCCGTCTGCAACTATGCGTTCACCACCAAGGCGAACTGTGAGCGGCATTTGCGCAATCGACATGGCAAGACCAGTCGCGAGGATGTGAAACGTGCGATTGTCTATCATCCGGCCGAGGATGCCAGCTGCGAGGAGAACAAATCGCGGACCGAGGCCGATATCCTGACGGAGTTGAGCGGCTATCGTTGTGCAACACCCACGGAGCACAGCTCATCGGCTAGTTCCTCGTCACAGCTGAAGCATATGTTGCTGGCGGAGCCGACGCCGGCCGTAAAGgtagctgcaacaacagctgcagcagcagcagcagcaacaacaacatcgctGCCACAACAACCGCTCAAGATTCAGGTGAAGAGCTTGGATCAGCTGGTGGATAAGCCACTGCCGGCACTCGATCTCAGCATGGATGCGCTCGACCTGAGCAAGAAGCCCGCCCAGCTGCTGGCCGAGCAACGGGAGCAAAGGGAGCAGCTCGAAAGACACgaattgctgttgcagcagcagcaacagcagcagcaacaacaacagcaacagcagcagcagcaacaattgtttgGGGTTGGCGATGCAGCTGCTCAGTATATGCAGATGTTGCGCAGCTTCATGCTTCAGCAATCACCCGCTTTTCCTTTCTTTAGTTTTATggcgccaccgccaccaacaacagcggcagcggcagcggcagcagtagcagctgcggcagcagcagacaagtcaatgacaacaaatccaacagcagcagcagcaggcacaacagcagcaacaattgctgcaatGCCACTGTCGCTGCCAGTGCCACTGGCCGCTGGTGGTCCCGTCAAGATGGTCATCAAGAATGGCGTCCTGATGcccaagcagaagcagcgccGCTATCGCACCGAGCGCCCCTTTGCTTGCGAGCATTGCTCGGCTCGCTTCACCCTGCGCTCCAACATGGAGCGGCAcgtgaagcagcagcatccacagtTCTATGCGCAGCGCCAGCGACACCGCAGCGGTCATCATGTGATGCGTGAACGGACTGCATCCTCGAGTGCTGCCCAAGCGGCAGCCGCTGctcaggcagcagcagcggccgccgccgcagcaatGAGTAAtctcagccagcagcaacagttgcagcagcagcagcaacagctgcagcattcgcattcacatcaCGTCCATGCGCCAATCTCTGAGCAGgtgaaatatgcaattttggCGCAGCAATTGAAGGCGCGCAAGGATACCGATTTGTTGCAACAGGCACTGGCACATGGCTCCAGCAGTGTTGTCGCCAATCCGCTGTTGCATTttagctacaacaacaacaacaataacaacggcaacagcagcagcaagcagcagcaacaacagttgtgCAACAACACTGGCAACTCTTTGGTGCTGGACGACGATGAGCCGCCTAAGCTGATCATTGACGAGGATGACGAGGATGTGGATGGCgaggacgatgaggatgaggaggaggagcaggaatttgatgttgatgaggaggagcaggaggatgAGGAGATGGACTTGGACGatgagcatcagcagcagccgcacgaggaggatgacgatgatgatattgatgatgatgatgcagcagcagcagcagctgctgcagcagaggcgtcgcagcaacaattgcagccaaCCAAGGACAAGCTGCAATCCAAGCCAATTGAGGCGGCCAAAAAGGTAGCGGAAACCATATTGGAGCAGGCAATCAAAGAGCGCGAGGAGAAAGCCACCGAGAAGCAGCCGCATCCTCAATCGGAGTCCATCGGCGGCAATAAGCCGGCGACGCCAACCACAATGAAAACGATGATTGCACAAGCTGAATCGGTGGCCAAGTCCTTGAAGGAGGTGGCCAGTTCACCATTCAAGGATGAATCTCAGGATCTGGTGCCTGTCGCCAAACTGGTGGACAATGCGACCAGCAATCAGGTGTCGTTCAACAGCTATTTCCGTCCCAGCGACGTCGCCAATCATATGGAGCAGAGCGACGAGGAGGGTCTCGTTGCCAGCGGCAGCGCCAGCGAGAGCAACAATTCCGGCACCGAGGAtgtgaccagcagcagcagcagctgcggcaatGACACCAAAAAGAAATCCGCCTACAGCCTGGCACCGAACCGTGTCAGCTGCCCATATTGCCAGCGCATGTTCCCCTGGAGCAGCTCGCTGCGTCGCCACATCCTGACGCACACCGGCCAGAAGCCGTTCAAGTGCTCCCACTGCCCGCTGCTGTTCACCACGAAGAGCAACTGCGATCGCCATCTGTTGCGCAAGCATGGCAACGTTGAGTCCGCCATGTCCGTCTATGTGCCCACCGAGGATGTCAGCGAACCGATACCCGTGCCCAAGTCCGTCGAGGAGATTGAGCTCGAGGAGCAGCGACGTCGCCAGGCGGCCGAAGCCGAACAGGCCGAGCGTGAGCAGCGCGAGCGCCAAAAGGAGCGCGAACGCGAACTGGAAttggaacgggaacgggaacgggaacacCAACAGTTGATCCAACAGTTGCGCCAACAAAtggccgctgctgcagcggctgctgtcGCTGTAGCCGCCGTTGCTGCACCAGCGCATCCACCACCGCCAGACCAATCGCCACCAGGCCTGGAGGCGAGCAGTGATCTGCCCTACAAATGCCATCTGTGCGAGTTCTCATTCGGCGAGCGGCTGCAGTGTCTCGAGCACATCAAGCAGCTGCACGCACACGAGTTCGccctgctgctggccaaggGAGCCATCGAAACGGATGCACAGctgcagcaccaacagcagcagcagcagcagcaacagttgccagcgACTGGCGGCGCTCCGCATTCGGATGatgaggctgctgctgtcggcACCAGATCGGGCAAATATCCCGACTATAGCAATCGTAAAGTGATTTGCGCATTTTGCGTGCGTCGCTTCTGGTCAACGGAGGATCTGCGGCGCCACATGCGCACCCATTCCGGTGAGCGGCCGTTCCAGTGCGAGATCTGCTTGAGGAAGTTCACATTGAAGCACAGCATGCTGCGACACATGAAGAAGCACAGTGGACGCAGTCACAATGGTGGCGAGCTCGATCATCAATCCGATTGCTCCGAAGATGAGCAACTGTTGCCCTGCTCCCCACCCTCAACGCCAACGcccactaacaacaacaataacaacaacaacacttgccagaacaacaacaataataacaacaataacaacaacaatagcaatagcaaacaGGTGCTGCGCGAGCTGCTTGGCAAGGCGAACGAGTGGCGAGTGAGTCGCCTGGGTGAGCACAAGGAGAACATTGccgaggcaacaacaacaccctcagcagcaacagcagcagcggcagcaacagctgcagccgcagcagcagcagcagcagctgctgtggccAGTGGCGATCTAATTGGTAATCTGTTGGGGATCAGTGATCAGGGCATACTAAACAAGCTGCTCTCCTCACCAGACGAAGCTGCCAAGCTGCTAGGCGTGGAGAAGTAA
Protein Sequence
MLATQQQQQQQQQQQQQQQQQATAASAATHEDARDLGLMETRQRRDSSTSESSLEHLDLGRTPKKLSSSSGAPQPTSTPHDTAVTATSRKRKLRQQHHQQQQQLPLSDEEQQQQQQQQQQQLLDSSAQRPRHKQRRSAVAAAASASIVVDYSASGDASSLRKKFRLNRSSASSNAANGDLSESGFVDGSGYLLGSNSNNNNNNNNNSNNNNNNISNSSSSSAVAQSAAAAASAAHHAPSVSSSGGSSPQGLSSAESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLNFTTNGNMHRHMRTHKQHQASQQQQQQQQQHSQQQQSTQQQQQAQSQQQQQRRQQHAGGAGAGAAGSVSGSAQLLTTRAESYESDASCSTDVSSELNSHSSNSNQSNHNNHNNNNNNNNNSHKTNNNNNNNEDELELEDEQLVLSSKQRRHKAALNNNNIIRDEEHDNRPDDDSDVDSADSVAQVITSTPDVATLLASGGTSPTHSHSESHSPPLLLQSCPACNSGEFESVPALCAHLDAEHADIPAKCRECEVIFATHRQLQAHSCRGLPPLLGVSSSPLHKQEESELEEQQQHEEDHEQQQHKQEEQEQAEQRECEDFFQQLYLKNKSSATLLPSPIKHEPADQRQDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSQHSVDGRDGEEEAQDAFTNEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRYHLSEVGAAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREDVKRAIVYHPAEDASCEENKSRTEADILTELSGYRCATPTEHSSSASSSSQLKHMLLAEPTPAVKVAATTAAAAAAATTTSLPQQPLKIQVKSLDQLVDKPLPALDLSMDALDLSKKPAQLLAEQREQREQLERHELLLQQQQQQQQQQQQQQQQQQLFGVGDAAAQYMQMLRSFMLQQSPAFPFFSFMAPPPPTTAAAAAAAVAAAAAADKSMTTNPTAAAAGTTAATIAAMPLSLPVPLAAGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRHRSGHHVMRERTASSSAAQAAAAAQAAAAAAAAAMSNLSQQQQLQQQQQQLQHSHSHHVHAPISEQVKYAILAQQLKARKDTDLLQQALAHGSSSVVANPLLHFSYNNNNNNNGNSSSKQQQQQLCNNTGNSLVLDDDEPPKLIIDEDDEDVDGEDDEDEEEEQEFDVDEEEQEDEEMDLDDEHQQQPHEEDDDDDIDDDDAAAAAAAAAEASQQQLQPTKDKLQSKPIEAAKKVAETILEQAIKEREEKATEKQPHPQSESIGGNKPATPTTMKTMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQVSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSSCGNDTKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRQAAEAEQAEREQRERQKERERELELEREREREHQQLIQQLRQQMAAAAAAAVAVAAVAAPAHPPPPDQSPPGLEASSDLPYKCHLCEFSFGERLQCLEHIKQLHAHEFALLLAKGAIETDAQLQHQQQQQQQQQLPATGGAPHSDDEAAAVGTRSGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRSHNGGELDHQSDCSEDEQLLPCSPPSTPTPTNNNNNNNNTCQNNNNNNNNNNNNSNSKQVLRELLGKANEWRVSRLGEHKENIAEATTTPSAATAAAAATAAAAAAAAAAAVASGDLIGNLLGISDQGILNKLLSSPDEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00535518;
90% Identity
iTF_00525357;
80% Identity
-