Tsim017119.1
Basic Information
- Insect
- Tetramorium simillimum
- Gene Symbol
- ttk
- Assembly
- GCA_011636635.1
- Location
- VBVQ01003260.1:16366-18897[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 6.5e-07 0.00052 20.2 0.0 20 38 203 222 187 228 0.77 2 5 1.3e-11 1.1e-08 35.2 0.0 4 43 238 277 236 279 0.86 3 5 0.85 6.8e+02 0.6 0.0 30 43 275 289 274 291 0.89 4 5 0.24 1.9e+02 2.4 0.0 21 35 307 321 293 326 0.78 5 5 1.5e-10 1.2e-07 31.9 0.1 4 39 351 386 348 390 0.94
Sequence Information
- Coding Sequence
- ATGACTGACGATAGTCAATGTAAAATCAATCAGAGCTATCGCTTTAAATGGAACAACTATCAGAATCATCTGTCCAACGTCGTGCGACAGCTCCTGGAGGAGGACTGCATGGTGGATGTCACCCTATCCGCAGCTGGTCAACGTATTCATGCGCATCGCATTGTATTATGCGCATGTAGCATTCTGTTTCAAgaaGTGCTTAGTCAAGTAACGGAAGATTATCCAACGATTATTCTAAGCGACATATCACCTCAggatataaaatcaattatcgaATTCATATATCACGGTGAGATCCGTGTTCCCGTCGATAATATATGCAGCTTGCTTGAAGCTGCgcgatcattaaaaataagcGGCCTTGCCGATATAATTGGAGTTGGAGAGAACGAAATTATTAGAAGCAAAAAGGATTCCATGGAAGAAGCTGCGACAGAGGTAGCAGAAATTACTGAATCCTTGGAGAACGACTCGCAAGAGTCAAGCACCATGGAAAAttgtataacaaataaaaagaagaaacgtcGCCGTGAGACTGTAAAGAAAGATTACAACAGCGACGTACTGGCGTCTGCAATTAATGACTTGAAATTAGGACAGACTTTAATAGAGGCTGCTACTAAGTACAATATTCCACGCTCGACCTTGTATATGCGGGCGAAAGCATTAGGCATACATTTAAACGCATCGAGAAACGGATATCCCGCAGAGTGTATGAATGCAGCTATAAATGCTGTGATAAATGGTTCGAGCTTGCAGCATGcatcagaaatatttagaataccTAAAACTGTGTTATGGAGGCGTATACAAAAAGAGGGCTATCAGACCCTACGTCCTGAAGTGAAGAAGAGATCGTACGCTTTAGACACGAGAGAGGCCGCTATTAAAGCTCTAGAAAGAGGGGAAAATTTGACAAAAGTTGCCCTggaatttaaaATACCAAAGACTACATTGTTTAGAGAAAAGGCACGACTGGTAGATCAAGGTAAATTGCCGTTATCGTTCTGGAAAAAACGCAAAACGGAGAATGAGGAATTAAAAAAGTCACGATTGGAAGAAGCTGTGGCTGCTTGCAAGAGCGGCCGAATGTCGCAAGCCGCGGCATCCATGACCTATCGCATTCCAAAAACTACGATATGGCGAAGGCTCCAGCAAGATGGCAAAAAGGTGGAAAGATCGTCGAACGCGAAGAAGCAACAACGACCGGTCGATACGCCAGAACTGCAAGACGCTCAGGTGAAGATGCAGGAAACATCCAACTTCAATTATTGCGAGGTTGCATCGGAAATACCTATAACTTATATAGATGAGAACAGCATACCTGAGGATTCCGTGATAATCTTAACAACGGAGGAAATGGATGAGCTGAATCTAGAGGGAGGCAggcaaattattgtaaattcggAATCTGGACAGGAATATATTCCATGTACGATAAGTATCGAAGATAGCGCAAACTATCCAGTGGCTGAGAGTTAG
- Protein Sequence
- MTDDSQCKINQSYRFKWNNYQNHLSNVVRQLLEEDCMVDVTLSAAGQRIHAHRIVLCACSILFQEVLSQVTEDYPTIILSDISPQDIKSIIEFIYHGEIRVPVDNICSLLEAARSLKISGLADIIGVGENEIIRSKKDSMEEAATEVAEITESLENDSQESSTMENCITNKKKKRRRETVKKDYNSDVLASAINDLKLGQTLIEAATKYNIPRSTLYMRAKALGIHLNASRNGYPAECMNAAINAVINGSSLQHASEIFRIPKTVLWRRIQKEGYQTLRPEVKKRSYALDTREAAIKALERGENLTKVALEFKIPKTTLFREKARLVDQGKLPLSFWKKRKTENEELKKSRLEEAVAACKSGRMSQAAASMTYRIPKTTIWRRLQQDGKKVERSSNAKKQQRPVDTPELQDAQVKMQETSNFNYCEVASEIPITYIDENSIPEDSVIILTTEEMDELNLEGGRQIIVNSESGQEYIPCTISIEDSANYPVAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423781; iTF_01421670; iTF_01422343; iTF_01422833; iTF_01421461; iTF_01422143; iTF_01423039; iTF_01523501; iTF_00125825; iTF_00126849; iTF_00128101; iTF_01405605; iTF_01406407; iTF_01228296; iTF_01405898; iTF_00129643; iTF_01228939; iTF_00129868; iTF_01229133; iTF_01406669; iTF_01407149; iTF_01520141; iTF_00128878; iTF_01523279; iTF_00127600; iTF_01520401; iTF_01408082; iTF_00126101; iTF_01408406; iTF_00126616; iTF_01228473; iTF_01407514; iTF_00129115; iTF_00127360; iTF_00128352; iTF_00015299; iTF_01261763; iTF_01261927; iTF_00016136; iTF_00016782; iTF_00015962; iTF_00015483; iTF_00016607; iTF_00730883; iTF_00729447; iTF_00729973; iTF_00730650; iTF_00729211; iTF_00730175; iTF_01477029; iTF_01477729; iTF_00181890; iTF_00417478; iTF_00181415; iTF_00417707; iTF_00181229; iTF_01476365; iTF_01476845; iTF_01477488; iTF_00182545; iTF_00182715; iTF_00182076; iTF_01476096; iTF_00898894; iTF_00898668; iTF_00385681; iTF_00385188; iTF_00765777; iTF_00765458; iTF_00885276; iTF_00884990; iTF_01099346; iTF_01099108; iTF_00014835; iTF_00014642; iTF_01245331; iTF_01245136; iTF_01355543; iTF_01355223; iTF_01408984; iTF_01409321; iTF_01015964; iTF_01015715; iTF_01354524; iTF_01354753; iTF_00265130; iTF_01254917; iTF_00109929; iTF_00868682; iTF_00867309; iTF_00868973; iTF_00109742; iTF_01254709; iTF_00868247; iTF_00264920; iTF_00264410; iTF_00867548; iTF_00868028; iTF_00264189;
- 90% Identity
- iTF_01423781; iTF_01421670; iTF_01422343; iTF_01422833; iTF_01421461; iTF_01422143; iTF_01423039;
- 80% Identity
- iTF_01423781;