Obir004757.1
Basic Information
- Insect
- Ooceraea biroi
- Gene Symbol
- bab2
- Assembly
- GCA_003672135.1
- Location
- NC:13054997-13057481[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.8e-06 0.005 15.9 0.0 23 38 208 224 188 230 0.79 2 4 1.1e-09 1.1e-06 27.6 0.0 5 41 241 277 239 281 0.86 3 4 0.1 1e+02 2.1 0.0 21 34 308 321 292 326 0.80 4 4 9.2e-10 9.6e-07 27.8 0.1 4 38 352 386 349 391 0.91
Sequence Information
- Coding Sequence
- ATGACCGACGTCGCCAGCCAGCAGGGGATCACGCACATTAAATGGAACAATTATCAAAGCCACCTGTCCGACGTCGTGCGAGATCTCCTCGCGGACAATTGCATGGTCGATGTCACGCTGTGCGCGGCTGGCCAGCGAATCCAGGCGCATCGCATCGTGCTGTGCGCGTGCAGCACTCTGTTCCATGAACTCCTCAGTCAAGTGACAGAAGATTATTCGACGATTATTTTGAGCGATATATCTCCTCGGGATATCCAATCAATTATCCAATTCATGTACCATGGTGAGGTCCGGGTGCCTGTGGAAGATATCAGCAGCTTACTCGAGGCTGCACGATTGCTGAAGATAAGCGGTCTTATTGATATAGATGAAGTCGTGGAGAGTGAAACTACTATAAACAGAAAAGAGTCTGCCGAAGAAACCGCTGCAGGGATAGACGAAAGTGAAGAAGGTACTTCTGGGGCTCTCGACAAGGATCTACAGGAGCAAGCCGGCGCCGAGAGTTGTGTCCTgaataagaagaagaaacgtcgtcgcgaTATTGCAAAGAGGGATTACAACGACGATATGCTGGCATCTGCGATTAACGATTTAAAATTGGGACAGACTTTAATAGAGACTGCCACTAAGTATAATATACCACGCTCAACATTGTACATGCGGGCGAAGGCATTGGGCATACACTTAAATGCATCGAGAAACGGATATCCTGTGGAATGTATGAACGCAGCGATAACTGCCGTGATCGGTGGCTCAAGCTTGCAGCATGCATCAGAGATGTTCCGAATTCCCAAAACTGTATTGTGGAGACGTATGCAAAAGGAGGGCTACCAGATCTTGCGTCCCGAAATGAAGAGATCGTACGCCCTAGGCACGAGAGAGGCTGCTGTTAAAGCTCTGGAAAGGGGAGAGAATCTGACAAAAGTTGCATTGGAATTTAAGATACCGAAGACAACGTTGTTCAGGGACAAGGCGCGACTGGTGGACGAAGGTAAATTGCCACTGTCGTTTTGGAAGAAGCGCAAAACCGAGAATGAGGAATTGAAGAAATCGCGATTGGAGGAGGCTGTGGCCGCCTGCAAGGGTGGTAGAATGTCGCAGGCTGCGGCATCGATGACGTATCACATTCCGAAAACTACCATATGGCGGAAACTTCAGCAGGATGGGAAAAAGGTGGAGAGATCGACGAGTGTGAAGAAGCAACAACGGCTGATGGAGCCGATACACAACACGGAAGTTAAACCGCAAGAAAGTTCCAATTTTAACTATTGCGAGGTCTCATCGGAAATACCTATAACGtacataaatgaaaatagCATACCCGAAGATTCCGTGATAATCTTAACAACGGATGAAATAGACGAGTTAAACTTGGAAGAAGGGAGACAGATAATTGTAAATTCGGAATCTGGACAAGAATACGTTCCATGTACAATAAGCATCGAAGATAATTCTAACTATCTGAAAGCTGAGAGTTAA
- Protein Sequence
- MTDVASQQGITHIKWNNYQSHLSDVVRDLLADNCMVDVTLCAAGQRIQAHRIVLCACSTLFHELLSQVTEDYSTIILSDISPRDIQSIIQFMYHGEVRVPVEDISSLLEAARLLKISGLIDIDEVVESETTINRKESAEETAAGIDESEEGTSGALDKDLQEQAGAESCVLNKKKKRRRDIAKRDYNDDMLASAINDLKLGQTLIETATKYNIPRSTLYMRAKALGIHLNASRNGYPVECMNAAITAVIGGSSLQHASEMFRIPKTVLWRRMQKEGYQILRPEMKRSYALGTREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGRMSQAAASMTYHIPKTTIWRKLQQDGKKVERSTSVKKQQRLMEPIHNTEVKPQESSNFNYCEVSSEIPITYINENSIPEDSVIILTTDEIDELNLEEGRQIIVNSESGQEYVPCTISIEDNSNYLKAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_01099346;
- 80% Identity
- iTF_01099346;