Aash008034.1
Basic Information
- Insect
- Aphaenogaster ashmeadi
- Gene Symbol
- ttk
- Assembly
- GCA_003063805.1
- Location
- NJRQ01001553.1:22621-26298[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.6e-06 0.0023 18.1 0.0 8 38 195 225 188 231 0.71 2 4 1.1e-11 9.7e-09 35.3 0.0 4 43 241 280 239 282 0.86 3 4 0.21 1.9e+02 2.3 0.0 21 35 309 323 295 328 0.79 4 4 1.3e-10 1.1e-07 31.8 0.1 4 40 353 389 350 394 0.91
Sequence Information
- Coding Sequence
- ATGACCGACGCTGACCAATGTAAAGTCAATCAGAGTTATCGTTTTAAATGGAACAACTATCAGAATCATCTATCCGACGTCGTGCGACAGCTCTTGGAGGAAGACTGCATGGTGGATGTCACTCTATCTGCAGCTGGTCAACGTATTCACGCGCATCGCATTGTATTATGCGCATGTAGCATTTTGTTTCAAgaAGTGCTCAGTCAAGTGACAGAAGATTATCCAACGATTATTCTAAGTGATATATCTCCTCAGGATATAAAATCGATTATCGAATTTATGTATCACGGCGAGATCCGAGTTCCAgtggaaaatattaataccttACTTGAAGTTGCAcgatcattaaaaataagcgGTCTTATTGATATAGATGGAGTTggagaaaacgaaattattagaAACAGAAAAGATTCTACGGAAGAGACTGTGACAGAAATAGGGGAAGTAGAAGACAACATTGGATCTTTGGAGAATGACTCGCATGAACCAAACACTGCTGAAAATTCTATTTcaagtaaaaagaagaaacgtcGTCGCGAGACTGTAAAAAGAGATTACAATGACGACATGTTGGCATCCGCAATTAATGACTTGAAATTAGGACAAACTTTAATAGAGGCTGCTACCAAGCACAATATACCACGTTCAACGTTATATATGCGGGCAAAAGCATTAGGCATACATTTAAACGCATCAAGGAATGGATATCCTACAGAATGCATGAATGCAGCTATAAATGCTGTGATCAATGGTTCAAGCTTGCAGCATGCatcagaaatatttagaataccTAAAACCGTGTTGTGGAGGCGTATACAAAAGGAGGGGTATCAGACTCTACGTCCTGAAATGAAGAGGTCATATGCTTTAGACACAAGAGAGGCCGCTGTTAAAGCTTTGGAAAGAGGAGAAAATTTGACAAAAGTTGCTCTagaatttaaaATACCAAAGACTACATTGTTTAGAGAAAAGGCACGGCTAGTAGATCAAGGTAAATTGCCGTTATCGTTTTGGAAAAAACGCAAAACGGAGAATGAGGAATTAAAGAAATCGCGATTAGAGGAAGCTGTAGCTGCTTGTAAAGGTGGTAGAATGTCGCAAGCTGCTGCATCCATGACTTATCACATCCCAAAAACCACAATATGGCGAAGACTTCAACAAGATGggaaaaaaatggaaagatCATCGAATATGAAAAAGCAACAGCGACTGATCGATACGCCAGTATTGCATGATGCTCAGGTGAAAATGCAAGAAGCCTCTAATTTCAGTTATTGTGAgGTTACATCAGAAATACCTATAACTTATATAGATGAAGATAGTATACCTGAAGATTCTGTGATTATCTTAACAACGGAGGAGATGGATGAACTGAATTTAGAGGAAGGCAgacaaattattgtaaattcgGAATCTGGGCAAGAATATATTCCATGTACGATAAGTATCGAAGATAGCTCAAACTATTCAGAGGCTGAGAGTTAG
- Protein Sequence
- MTDADQCKVNQSYRFKWNNYQNHLSDVVRQLLEEDCMVDVTLSAAGQRIHAHRIVLCACSILFQEVLSQVTEDYPTIILSDISPQDIKSIIEFMYHGEIRVPVENINTLLEVARSLKISGLIDIDGVGENEIIRNRKDSTEETVTEIGEVEDNIGSLENDSHEPNTAENSISSKKKKRRRETVKRDYNDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPTECMNAAINAVINGSSLQHASEIFRIPKTVLWRRIQKEGYQTLRPEMKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFREKARLVDQGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGRMSQAAASMTYHIPKTTIWRRLQQDGKKMERSSNMKKQQRLIDTPVLHDAQVKMQEASNFSYCEVTSEIPITYIDEDSIPEDSVIILTTEEMDELNLEEGRQIIVNSESGQEYIPCTISIEDSSNYSEAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_01228296;
- 80% Identity
- iTF_00127600; iTF_00126101; iTF_00127360;