Pcal016018.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- ttk
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010002895.1:5074-7408[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.5e-07 0.0032 18.0 0.0 8 38 196 226 189 232 0.71 2 4 4.1e-11 2e-07 31.5 0.0 4 39 242 276 240 283 0.85 3 4 0.053 2.6e+02 2.3 0.0 21 35 310 324 296 329 0.79 4 4 7.9e-12 3.9e-08 33.8 0.1 4 39 354 389 351 393 0.94
Sequence Information
- Coding Sequence
- ATGACAACCGACGCTGCACATTGTAAAATCAATCAAACTTATCGCTTTAAATGGAATAATTATCAGAATCATCTGTCTGACGTCGTGAGGCAGCTCTTAAAGGAGGATTGTATGGTGGATGTCATTCTATCCGCAGCTGGTCAACGTATTCACGCGCATCGCATTGTATTGTGCGCTTGTAGTATTTTGTTTCAAGAGGTGCTTAGTCAAGTGACAGAAGATTGTCCAACAATTATTCTGAGTGATATATCTCCTCAGGATATAAAATCAATTATTGAATTCATATATCATGGTGAAATCCGCGTTCCTATGGAAAACATTAGTAGCTTACTTGAAGCTGCACATTCATTAAAAATAAGTGGTCTTATTGATATAGATGGGCTTGAAGAAGATGAAAGTATTAGAAGTAGAAAAGATTCTACAGAAGAAACTATGACAGAAATAGGGGAAATTGAAAACAATGTTGAACCTTTGGAAAATGAATCTCATGAACCAAGCACTACTGAAAATTGTATTTCAAATAAAAAGAAAAAACGTCGCCGTGAGACTATAAAAAGAGATTACAATGATGACATGTTGGCATCTGCAATTAACGACTTGAAATTAGGACAAACTTTGATAGAAGCTGCTACTAAGCACAATATACCACGCTCGACGTTATATATGCGGGCAAAAGCATTGGGAATACATTTAAATGCATCAAGAAACGGATATCCTGCAGAATGCATGAATGCAGCAATAACTGCTGTAATCAATGGTTCAAGCTTACAACATGCATCGGAAGTATTTAGAATTCCTAAAACTGTGCTATGGAGACGTATACAAAAGGAAGGCTATCAAATTTTACGTCCTGAAATGAAGAGATCGTATGCTTTAGACACAAGAGAAGCTGCTGTTAAAGCTTTGGAAAGAGGAGAAAATTTGACAAAAGTTGCTTTGGAATTTAAAATACCAAAGACCACATTGTTTAGAGAAAAGGCACGACTAGTGGATCAAGGTAAATTGCCATTATCATTTTGGAAAAAACGCAAAACTGAGAATGAGGAATTAAAGAAATCACGATTAGAAGAAGCTGTAGCTGCTTGTAAAGGTGGCAAAATGTCACAAGCTGCAGCATCTATGACATATCATATTCCAAAAACTACAATATGGCGAAGACTCCAACAAGATGGAAAAAAGATAGAAAAATCATCAAATGTGAAAAAACAACAACGATTAATTGATACACCAGTATTGAATGATGCTCAAATGAAAATGCAAGAAAACTCCAATTTTAGTTACTGTGAGGTTACATCAGAAATGCCTATAACTTACATAGATGAAAATAGTATACCTGAGGATTCTGTGATAATCTTAACAACAGAGGAAATGGATGAACTAAATTTGGAAGAAGGCAGACAAATTATAGTAAATTCGGAATCTGGACAGGAATATATTCCATGTACGATAAGTATCGAAAATAATTCCAATTATTCAGAAGCTGAGAGTTAG
- Protein Sequence
- MTTDAAHCKINQTYRFKWNNYQNHLSDVVRQLLKEDCMVDVILSAAGQRIHAHRIVLCACSILFQEVLSQVTEDCPTIILSDISPQDIKSIIEFIYHGEIRVPMENISSLLEAAHSLKISGLIDIDGLEEDESIRSRKDSTEETMTEIGEIENNVEPLENESHEPSTTENCISNKKKKRRRETIKRDYNDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPAECMNAAITAVINGSSLQHASEVFRIPKTVLWRRIQKEGYQILRPEMKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFREKARLVDQGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKIEKSSNVKKQQRLIDTPVLNDAQMKMQENSNFSYCEVTSEMPITYIDENSIPEDSVIILTTEEMDELNLEEGRQIIVNSESGQEYIPCTISIENNSNYSEAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_01228296;
- 80% Identity
- iTF_01229133;