Lnig009808.1
Basic Information
- Insect
- Lasius niger
- Gene Symbol
- ttk
- Assembly
- GCA_001045655.1
- Location
- LBMM01001666.1:4645-7057[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.3e-06 0.0014 18.3 0.0 5 38 166 199 162 205 0.72 2 5 4.7e-10 4.9e-07 29.4 0.0 4 39 215 249 213 256 0.85 3 5 0.14 1.5e+02 2.2 0.0 21 34 283 296 269 302 0.80 4 5 4.3 4.5e+03 -2.5 0.0 32 44 311 324 311 325 0.83 5 5 3.6e-11 3.8e-08 32.9 0.1 4 39 327 362 324 366 0.93
Sequence Information
- Coding Sequence
- ATGACTGACGTCGCTGGCCAGCGTAAAGTCAATCAGAGTTATCGCTTTAAATGGAACGATTATCAGAATCACCTGTCCGATGTCGTGCGACAGCTCTTGGAGGAGGATTGCATGGAAGTTCTTAGTCAAGTGACAGAAGATTGTCCAACGATTATTCTGAGCGATATATCTCCTCAggatataaaatcaattattgaaTTCATTTATCACGGCGAGGTTCGAATTCCtgtagataatattaatagcttGCTCGAGGCTGCACAGTCCCTAAAGATAAGCGGTCTGGTCGATATAAATggatttgaagaaaaatccaTTAGAAGTATAAAAGATTCTACAGAAGAAACTACAACAGAAATAGatcaaattgaagaaaatgcaGTTGAATCTTTAGAGAATGACTTGCATGCACAAGGTACCGTTGAAAATTGTATCTCaaatagaaagaagaaacgtCGCCGCGAGACTGCAAAGAGAGATTACAGCGATGACATGTTGGCTTCTGCAATTAATGACTTAAAATTGGGACAAACTTTAATAGAAGCTGCTACTAAGCACAATATACCACGCTCGACACTATACATGCGGGCAAAAGCATTAGGCATACATTTAAATGCATCAAGAAACGGATATCCTGCAGAATGTATGAGTGCAGCAATAACTGCTGTAATCAGCGGTTCAAGCTTACAACATGCATCAGAAATGTTTAGAATTCCTAAAACTGTGTTATGGAGACGTATACAAAAAGAGGGTTATCAGATCTTGCGTCCTGAAACAAAGAGGTCGTATGCTTTAGATACACGAGAGGCTGCTGTTAAAGCTTTGGAAAGAGGGGAGAATCTGACAAAAGTTGCATtagaatttaaaatACCAAAGACTACATTGTTTAGAGACAAAGCACGATTAGTAGATCAAGGTAAATTGCCTGTGTCGTTTTGGAAGAGACGCAAAACAGAAAATGAGGAACTGAAAAAATCGCGATTAGAAGAGGCTGTGGCTGCTTGCAAGGGTGGCAAAATGTCGCAAGCTGCAGCGTCTATGACATACCGTATTCCGAAAACTACGATATGGCGAAGGCTTCAacaagagggaaaaaaaataggaagactgtcgaatataaaaaagcgACAACAACATCTGATTGGTATGCCACAGCACGATACTGAGATAAAAATACAGGAAGGCTCCAGTTTTAGCTATTGCGAGgttTCTTCAGAAATACCTATAACTTATATAGATGAGAATAATATACCTGAAGATTCCGTAATAATCTTAACAACGGAGGAAATGGAGGAATTGAATTTTGAAGAAGGAAGACAAATCATTGTAAATGCAGAATCTGGGCAGGAATATATTCCATGTACAATAAGTATCGAAGATAGCTCAAACTATTCAGAAAGTGAAAGttag
- Protein Sequence
- MTDVAGQRKVNQSYRFKWNDYQNHLSDVVRQLLEEDCMEVLSQVTEDCPTIILSDISPQDIKSIIEFIYHGEVRIPVDNINSLLEAAQSLKISGLVDINGFEEKSIRSIKDSTEETTTEIDQIEENAVESLENDLHAQGTVENCISNRKKKRRRETAKRDYSDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPAECMSAAITAVISGSSLQHASEMFRIPKTVLWRRIQKEGYQILRPETKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDQGKLPVSFWKRRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYRIPKTTIWRRLQQEGKKIGRLSNIKKRQQHLIGMPQHDTEIKIQEGSSFSYCEVSSEIPITYIDENNIPEDSVIILTTEEMEELNFEEGRQIIVNAESGQEYIPCTISIEDSSNYSESES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_00265130;
- 80% Identity
- iTF_00868247;