Aech007145.1
Basic Information
- Insect
- Acromyrmex echinatior
- Gene Symbol
- ttk
- Assembly
- GCA_000204515.1
- Location
- NW:362047-365767[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.7e-07 0.00086 18.2 0.0 5 38 192 225 188 231 0.72 2 4 1.3e-11 2e-08 33.1 0.0 4 39 241 275 239 282 0.85 3 4 0.051 78 2.4 0.0 21 35 309 323 295 329 0.79 4 4 1.9e-10 3e-07 29.3 0.0 4 38 353 387 350 392 0.91
Sequence Information
- Coding Sequence
- ATGACTGACACTAGCCAATGTAAAGTCAATCAGAGTTACCGTTTTAAATGGAACAATTATCAAAATCATCTGTCTAACGTTGTGCGACAGCTTTTGAAGGAGGATTGTATGGTGGATGTCACTCTATCCGCAGATGGTCAACGTATTCATGCGCATCGCATTGTATTATGCGCGTGTAGTATTTTGtttcaaGAAGTGCTAAGTCAAGTAACAGAAGATTATCCAACGATTATTCTAAGTGATATATCTCCTCAGGATATAAAGTCGATTatcgaatttatatatcatggAGAAATTTGTGTTCCTGTTGAAAATATCAGTAGCTTACTTGAAGCTGCACggtcgttaaaaataaatggtcTTATTAACATAGATGGAgtttatgaaaatgaaattaaaggaaaaaaagatcaaGCAATGGAAGAAACTGTGTCAAGGGTAGAGGAAATTCAGGACAATGCTGAATCTTTGGAGAATGAAACTCATGTACCAAGCACTGctgaaaattgtatttcaaataaaaagaagaaacgacGTCGTGACACTGTAAAGAGAGAATACAGTGACGATATGTTAGCATCTGCAATTAATGATTTGAAATTAGGACAAACTTTAATAGAAGCTGCTACTAAGCATAATATACCACGTTCGACATTGTATATGCGGGCAAAAGCGTTAGGCATACATTTAAATGCATCAAGGAATGGATATCCTGCAGAATGCATGAATGCAGCTATAAACTCTGTGATCAATGGTTCGAGCTTGCAGCGTGCatcagaaatatttagaataccTAAAACTGTATTATGGAGACGTATACAAAAGGAAGGCTATCAGATCTTACGTCGTCAAATGAAAAGATCATATGCTTTAGACACGAAAGAGGCCGCTGTTAAAGCTTTAGAAAGAGGAGAAAATTTGACAAAAGTTGCTCTGgagtttaaaATACCAAAGACTACATTGTTTAGAGAAAAGGCACGGCTAGTAAATCAAGGTAAATTACCGTTATCGTTTTGGAAGAAACGCAAACCTGAGAATGAGGAATCAAAGAAGTCGCGATTAGAAGAGGCTGTAGCGGCTTGCAAAGGTGGCAGAATGTCGCAGGCTGCAGCGTCCATAATGTATCACATTCCAAAAACTACGATATGGCGAAAACTTCAACAAGATGGAAAAAAAGTGGAAAAATCATCGAATGTGAAAAAGGAACGACTAACTGATACACCAGTACTGCATGACTCTCAGGTGAAAATACAAGACACGTCCAATTTCAATTATTGCGAGGTTGCATCAGAAATACCTATAACTTATATAGACGAGGATAGTATACCTCAGGATTCCGTCATAATCCTAACAACAGAAGAAATGGATGAGTTAAACTTGGAAGGAGGCAgacaaattattgtaaattcggAGTCCGGACAGGAATATATTCCATGTACAATAAGTATCGAGAATAATTCTAACTATTCTGAGACTGAGAGTTAG
- Protein Sequence
- MTDTSQCKVNQSYRFKWNNYQNHLSNVVRQLLKEDCMVDVTLSADGQRIHAHRIVLCACSILFQEVLSQVTEDYPTIILSDISPQDIKSIIEFIYHGEICVPVENISSLLEAARSLKINGLINIDGVYENEIKGKKDQAMEETVSRVEEIQDNAESLENETHVPSTAENCISNKKKKRRRDTVKREYSDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPAECMNAAINSVINGSSLQRASEIFRIPKTVLWRRIQKEGYQILRRQMKRSYALDTKEAAVKALERGENLTKVALEFKIPKTTLFREKARLVNQGKLPLSFWKKRKPENEESKKSRLEEAVAACKGGRMSQAAASIMYHIPKTTIWRKLQQDGKKVEKSSNVKKERLTDTPVLHDSQVKIQDTSNFNYCEVASEIPITYIDEDSIPQDSVIILTTEEMDELNLEGGRQIIVNSESGQEYIPCTISIENNSNYSETES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_01477029;
- 80% Identity
- iTF_00015483;