Tsep007757.1
Basic Information
- Insect
- Trachymyrmex septentrionalis
- Gene Symbol
- ttk
- Assembly
- GCA_001594115.1
- Location
- NW:2533499-2536322[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.5e-07 0.00086 18.2 0.0 5 38 193 226 189 232 0.72 2 4 5.8e-12 7.7e-09 34.4 0.0 4 39 242 276 240 283 0.85 3 4 0.059 78 2.4 0.0 21 35 310 324 296 330 0.79 4 4 2e-11 2.6e-08 32.7 0.0 3 39 353 389 351 393 0.93
Sequence Information
- Coding Sequence
- ATGACTGACACTAGCCAATGTAAAGTCAATCAGAGTTACCGTTTTAAATGGAACAATTATCAAAATCATCTGTCTAACGTCGTGCGGCAGCTCTTGGAGGAGGATTGCATGGTGGATGTCACTCTATCCGCAGATGGTCAACGTATTCATGCGCATCGCATTGTATTATGCGCGtgtagtattttatttcaagAAGTGTTAAGTCAAGTGACAGAAGATTATCCAACGATTATTCTAAGTGATATATCTCCTCAGGATATAAAGTCAATTATCGAATTCATATATCATGGAGAAATTTGTGTTCCTGTTGAAAATATCAGTAGCTTACTTGAAGCTGCActgtcattaaaaataaatggtcTTATTAATATAGATGgagtttatgaaaatgaaattgttaaaggaaaaaaagatcaaACAATGGAAGAAACTATGTCAAGAGTAGAGGAAATTCAGGACAATGCTGAGCCTTTGGAGAATGAAACTCATGAACCAAGCACTgctgaaaattgtatttcaaataaaaagaagaaacgacGCCGTGACACTGTAAAGAGAGAATACAGTGATGATATGTTAGCATCTGCAATTAATGATTTGAAATTAGGACAAACTTTAATAGAAGCTGCTACTAAGCACAATATACCACGTTCGACGTTGTACATGCGGGCAAAAGCATTAGGCATACATTTAAATGCATCAAGAAATGGATATCCTGCAGAATGCATGAATGCAGCTATAAATGCCGTGATCAATGGTTCGAGCTTGCAGCATGCatcagaaatatttagaataccTAAAACTGTATTATGGAGGCGTATACAAAAGGAAGGATATCAGATCTTACGTCGTCAAATGAAAAGATCATATGCTTTAGACACGAAAGAGGCCGCTGTTAAAGCTTTAGAAAGAGGagaaaatttgacaaaagTTGCTCTGgagtttaaaATACCAAAGACTACATTGTTTAGAGAAAAGGCACGGCTAGTAAATCAAGGTAAATTACCGTTATCGTTTTGGAAAAAGCGCAAACCTGAGAATGAAGAATCAAAGAAGACGCGATTAGAAGAGGCTGTAGCGGCTTGTAAAGGTGGCAGAATGTCGCAGGCTTTAGCGTCTACAACGTATCGCATTCCAAAAACTACGATATGGCGAAGACTTCAACAAGATGGAAAAAAAGCGGAAAAATCATCAAATGTGAAAAAGGAACGATTAACTGATACACCAGTACTGCATGACTCTCAGGTGAAAATACAAGACACGTCCAATTTCAGTTATTGCGAGGTTGCATCAGAAATACCTATAACTTATATAGACGAGGATAGTATACCGCAAGATTCCGTTATAATCCTAACAACGGAAGAAATGGATGAATTAAACTTGGAAGGAGGCAgacaaattattgtaaattcgGTATGTCATgAGTCCGGACAAGAATATATTCCATGTACGATAAGTATCGAGAATAATTCTAACTATTCCGAGAGTGAGAGTTAG
- Protein Sequence
- MTDTSQCKVNQSYRFKWNNYQNHLSNVVRQLLEEDCMVDVTLSADGQRIHAHRIVLCACSILFQEVLSQVTEDYPTIILSDISPQDIKSIIEFIYHGEICVPVENISSLLEAALSLKINGLINIDGVYENEIVKGKKDQTMEETMSRVEEIQDNAEPLENETHEPSTAENCISNKKKKRRRDTVKREYSDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPAECMNAAINAVINGSSLQHASEIFRIPKTVLWRRIQKEGYQILRRQMKRSYALDTKEAAVKALERGENLTKVALEFKIPKTTLFREKARLVNQGKLPLSFWKKRKPENEESKKTRLEEAVAACKGGRMSQALASTTYRIPKTTIWRRLQQDGKKAEKSSNVKKERLTDTPVLHDSQVKIQDTSNFSYCEVASEIPITYIDEDSIPQDSVIILTTEEMDELNLEGGRQIIVNSVCHESGQEYIPCTISIENNSNYSESES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_01477029;
- 80% Identity
- iTF_01477029;