Fsel016636.1
Basic Information
- Insect
- Formica selysi
- Gene Symbol
- lov
- Assembly
- GCA_009859135.1
- Location
- CM020806.1:11477221-11479969[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 8.6e-07 0.0023 18.4 0.0 5 40 193 228 189 233 0.72 2 5 3.4e-10 9e-07 29.3 0.0 4 39 242 276 240 283 0.85 3 5 0.11 2.9e+02 2.1 0.0 21 34 310 323 296 329 0.80 4 5 2 5.2e+03 -1.9 0.0 32 45 338 352 338 352 0.89 5 5 6.1e-12 1.6e-08 34.9 0.1 4 40 354 390 351 394 0.91
Sequence Information
- Coding Sequence
- ATGACTGACGTTGCTGGCCAGCGTAAAGTTAATCAAAGTTATCGCTTTAAATGGAGCGATTATCAAAACCACCTATCCGATGTCGTACGACAGTTGTTGGAGGAGGACTGTATGGTAGACGTCACTCTGTCCGCAGCTGGTCAACGTATTCACGCGCATCGCATCGTATTATGCGCATGCAGCACTTTGTTTAAAGAAGTTCTTAGTCAAGTGACAGAAGATTATCCAACAATTATTCTGAGTGATATATCACctcagaatataaaattaattattgaattcaTTTATCATGGCGAGGTTCGAATTCCtgtagataatattaatagtttaCTTGAGGCTGCGCAGTCGCTAAAAATAAGTGGTCTTGTCGATATAAATGGATTTGAAgaaaaaactattaaaaacataaaagatTCTACGGAAGAAATTGTGACGGAAATagataaaattgaagaaaatgcAGTTGGGTCTTTAGAGAATGATTTACATACACAAAGCATCATTGAAAATTGTACCTCAaataagaagaagaaacgTCGCCGCGAAACTACAAAGAGAGATTACAGCGATGACATGCTGGCTTCTGCaattaatgatttaaaattaggACAAACTTTAATAGAAGCTGCTACTAAGCACAATATACCACGCTCGACGCTATATATGAGGGCAAAAGCATTAGGcatacatttaaatacatcAAGAAACGGATATCCCGCAGAATGTATGAGTGCAGCAATAACTGCTGTGATCAGTGGTTCAAGCTTACAACATGCATCAGAAATGTTCAGAATTCCTAAAACTGTGTTATGGAGACGCATACAAAAAGAGGGTTATCAGAACTTACGTTCTGAAACAAAAAGGTCATATGCTCTAGATACACGAGAGGCTGCTGTTAAAGCTTTGGAAAGAGGGGAGAATCTGACAAAAGTTGCACTAgaatttaaaaTACCAAAGACGACATTGTTTAGAGATAAAGCACGGTTAGTTGATCAAGGTAAATTGCCTTTGTCATTTTGGAAGAAACGCAAAACAGAAAATGAGGAATTGAAAAGATCGCGATTAGAAGAGGCTGTGGCTGCTTGCAAGGGTGGCAAAATGTCGCAAGCTGCAGCATCTATGACATACCATATTCCGAAAACTACGATATGGCGAAGGCTTCAACAAGAAGGGAAAAAAATGGGAAGACTATCAAATATGAAAAAACGACATCTGGGTGATATGCCACAGCATGATACTGAAGTAAAAATACAGGAAGGTTCCAGTTTTAGCTATTGTGAGgtTTCTTCAGAGATACCTATAACTTATATAGATGAGAATAGTATACCTGAAGATTCTGTAATAATCTTAACAACAGAGGAAATGGAACAATTGAATTTCGAAGAAGGAAGACAAATCATTGTAAATAcaGAATCCGGGCAGGAATTCATTCCATGTACAATAAGTATTGAAGATAACTCAAATTATTCAGAAAGTGAAAGTTAA
- Protein Sequence
- MTDVAGQRKVNQSYRFKWSDYQNHLSDVVRQLLEEDCMVDVTLSAAGQRIHAHRIVLCACSTLFKEVLSQVTEDYPTIILSDISPQNIKLIIEFIYHGEVRIPVDNINSLLEAAQSLKISGLVDINGFEEKTIKNIKDSTEEIVTEIDKIEENAVGSLENDLHTQSIIENCTSNKKKKRRRETTKRDYSDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNTSRNGYPAECMSAAITAVISGSSLQHASEMFRIPKTVLWRRIQKEGYQNLRSETKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDQGKLPLSFWKKRKTENEELKRSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQEGKKMGRLSNMKKRHLGDMPQHDTEVKIQEGSSFSYCEVSSEIPITYIDENSIPEDSVIILTTEEMEQLNFEEGRQIIVNTESGQEFIPCTISIEDNSNYSESES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_00265130;
- 80% Identity
- iTF_00730883;