Pbar000632.1
Basic Information
- Insect
- Pogonomyrmex barbatus
- Gene Symbol
- ttk
- Assembly
- GCA_000187915.1
- Location
- NW:2024869-2027517[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.5e-07 0.00099 18.0 0.0 8 38 196 226 189 232 0.71 2 4 4.1e-11 6.2e-08 31.5 0.0 4 39 242 276 240 283 0.85 3 4 0.053 81 2.3 0.0 21 35 310 324 296 329 0.79 4 4 7.9e-12 1.2e-08 33.8 0.1 4 39 354 389 351 393 0.94
Sequence Information
- Coding Sequence
- ATGACAACCGACGCTGCACATTGTAAAATCAATCAAACTTATCGCTTTAAATGGAATAATTATCAGAATCATCTGTCTGACGTCGTGAGGCAGCTCTTAAAGGAGGATTGTATGGTGGATGTCATTCTATCCGCAGCTGGTCAACGTATTCACGCGCATCGCATTGTATTGTGCGCTTGTAGTATTTTGtttcaagAAGTACTTAGTCAAGTGACAGAAGATTATCCAACAATTATTCTGAGTGATATATCTCCTCaggatataaaatcaattattgaatTCATATATCATGGTGAAATCCGCGTTCCTATGGAAAACATTAGTAGCTTACTTGAAGCTGcacattcattaaaaataagtggTCTTATTGATATAGATGGGCTTGAAGAAGATGAAAGTATTAGAAGTAGAAAAGATTCTACAGAAGAAACTATGACAGAAGTAGGGGAAATTGAAAACAATGTTGAACCTTTGGAAAATGAATCTCATGAACCAAGCACTActgaaaattgtatttcaaataaaaagaaaaaaacgcGCCGTGAGACTGTAAAAAGAGATTACAATGATGACATGTTGGCATCTGCAATTAATGACTTGAAATTAGGACAAACTTTGATAGAAGCTGCTACTAAGCACAATATACCACGCTCGACGTTATATATGCGGGCAAAAGCATTGGgaatacatttaaatgcaTCAAGAAACGGATATCCTGCAGAATGCATGAATGCAGCAATAACTGCTGTAATCAATGGTTCAAGCTTACAACATGCATCGGAAGTATTTAGAATTCCTAAAACTGTGCTATGGAGACGTATACAAAAAGAAGGCTATCAAATTTTACGTCCTGAAATGAAGAGATCGTATGCTTTAGACACAAGAGAAGCTGCTGTTAAAGCTTTGGAAAGAGGagaaaatttgacaaaagttGCTTTggaatttaaaATACCAAAGACCACATTGTTTAGAGAAAAGGCACGACTAGTGGATCAAGGTAAATTGCCATTATCATTTTGGAAAAAACGCAAAACTGAGAATGAGGAATTAAAGAAATCACGATTAGAAGAAGCTGTAGCTGCTTGTAAAGGTGGCAAAATGTCACAAGCTGCAGCATCTATGACATATCATATTCCAAAAACTACAATATGGCGAAGACTCCAACAAGAtggaaaaaagatagaaaaatcatCAAATGTGAAAAAACAACAACGATTAATTGATACACCAGTATTGAATGATGCTCAAATGAAAATGCAAGAAAACTCCAATTTTAGTTATTGTGagGTTACATCAGAAATGCCTATAACTTACATAGATGAAAATAGTATACCTGAGGATTCTGTGATAATCTTAACAACAGAGGAAATGGATGAACTAAATTTGGAAGAAGGCAGACAAATTATAGTAAATtcgGAATCTGGACAGGAATATATTCCATGTACGATAAGTATCGAAAATAATTCCAATTATTCAGAAGCTGAGAGTTAG
- Protein Sequence
- MTTDAAHCKINQTYRFKWNNYQNHLSDVVRQLLKEDCMVDVILSAAGQRIHAHRIVLCACSILFQEVLSQVTEDYPTIILSDISPQDIKSIIEFIYHGEIRVPMENISSLLEAAHSLKISGLIDIDGLEEDESIRSRKDSTEETMTEVGEIENNVEPLENESHEPSTTENCISNKKKKTRRETVKRDYNDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPAECMNAAITAVINGSSLQHASEVFRIPKTVLWRRIQKEGYQILRPEMKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFREKARLVDQGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKIEKSSNVKKQQRLIDTPVLNDAQMKMQENSNFSYCEVTSEMPITYIDENSIPEDSVIILTTEEMDELNLEEGRQIIVNSESGQEYIPCTISIENNSNYSEAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_00125825; iTF_00126849; iTF_00128101; iTF_00129643; iTF_01228939; iTF_00129868; iTF_01229133; iTF_00128878; iTF_00127600; iTF_00126101; iTF_00126616; iTF_01228473; iTF_00129115; iTF_00127360; iTF_00128352;
- 80% Identity
- iTF_01228473;