Lhum009890.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- bab1
- Assembly
- GCA_000217595.1
- Location
- NW:109682-112396[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.1e-07 0.0012 17.8 0.0 19 38 203 223 186 229 0.73 2 4 1.6e-10 2.2e-07 29.8 0.0 4 39 239 273 237 280 0.85 3 4 0.076 1e+02 2.0 0.0 21 34 307 320 293 325 0.80 4 4 3.3e-11 4.5e-08 32.0 0.1 5 39 352 386 351 391 0.93
Sequence Information
- Coding Sequence
- ATGAAAATCAATCAGAGTTATCGttttaaatggaataattatcaaaactaCCTATCCAATGTTGTGCAACAGCTCTTAAAAGAGGATTGTATGGTGGATGTCATTTTGTCTGCAGCTGGTCAACGTATTCATGCGCATCGTATTGTATTATGCGCATGTAGCACTTTGTTTCAAgAAGTTCTTAGTCAAGTGACGGAGGATTACCCAACAATTATTCTGAGTGATATCTCTCCCgaggatataaaattaattattgagtttATATATCATGGTGAAGTTCGAGTCcctgtagaaaatattaataatttactcgAGGCTGCAcgatcattaaaaataagtgGACTCGTTAATATAGATGGATTCGAAGAAAGTGCAACTACtataaacaaaagaaattatagtAAAGAGATTGTTACAGAAATGGATGAAGTTGAAGAAGATGTAGTTGAATCTTTAGAGAATGATTTACAGGATCAACATAAACAAACCATTACTGAAAActgtatttcaaataaaaaaaagaaacgtcgTCGCGAGACTGTAAAGAGAGATTATAGTGATGATATGTTAACATCTGCTATTAATGACTTGAAATTAGGACAAACTTTAATAGAGGCTGCTACTAAACACAATATTCCACGTTCAACACTATATATGCGAGCAAAAGCATTAGGCATACATTTAAATGCATCAAGGAATGGATATCCCGCAGAATGTATGAATGCAGCAATCACTGCTGTAATCaGTGGTTCAAGTTTACAACATGCATCAGAAATGTTCAGAATTCCTAAAACTGTGTTATGGAGACGTATACAAAAAGAAGGTTATCAAATTTTACGTCCTGAAATGAAGAGGACATATGCTCTAGACACAAGAGAGGCAGCTGTTAAAGCTTTGGAGAGAGGGGAGAATCTGACAAAAGTTGCACTagaatttaaaATACCAAAGACTACATTGTTTAGAGACAAAGTACGGCTAGTAGATCAAGGTAAATTGCCATTATCGTTTTGGAAAAAACGCAAAACTGAGAATGAggatttgaagaaattaagaTTAGAAGAAGCTGTGGCCGCTTGCAAAGGTGGTAGAATGTCCCAAGCAGCTGCATCTATGGCGTATCATATTCCAAAAACTACGATATGGCGAAGGCTTCAACAAGATgggaaaaaaagggaaagatcatcaaatatgaaaaaacaaCGAGGATTAATTGATACACCGCAGTATGATACTGAGGTCATTGATAAAACGCAAGAAGGCTCTGCTTTTAACTATTGTGAGGTTTCATCGGAAATACCTATAACTTATATAGATGAAAATAGCATATCTGAAGATTCCGTAATAATCTTAACAACAGAAGAAATAAACGATCTGAATTTGGAGGAAGGCAGgcaaattattgtaaactcaGAATCTGGACAAGAGTATGTTCCATGTACAATAAGTATCGAAGATGGTTCAAACTATTCAGAAGCTGAGAgttag
- Protein Sequence
- MKINQSYRFKWNNYQNYLSNVVQQLLKEDCMVDVILSAAGQRIHAHRIVLCACSTLFQEVLSQVTEDYPTIILSDISPEDIKLIIEFIYHGEVRVPVENINNLLEAARSLKISGLVNIDGFEESATTINKRNYSKEIVTEMDEVEEDVVESLENDLQDQHKQTITENCISNKKKKRRRETVKRDYSDDMLTSAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPAECMNAAITAVISGSSLQHASEMFRIPKTVLWRRIQKEGYQILRPEMKRTYALDTREAAVKALERGENLTKVALEFKIPKTTLFRDKVRLVDQGKLPLSFWKKRKTENEDLKKLRLEEAVAACKGGRMSQAAASMAYHIPKTTIWRRLQQDGKKRERSSNMKKQRGLIDTPQYDTEVIDKTQEGSAFNYCEVSSEIPITYIDENSISEDSVIILTTEEINDLNLEEGRQIIVNSESGQEYVPCTISIEDGSNYSEAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_00898894;
- 80% Identity
- iTF_00898894;