Basic Information

Insect: Cyphomyrmex costatus
Gene Symbol: ttk
Assembly: GCA_001594065.1
Location: NW:250303-253104[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 9e-07 0.00096 18.2 0.0 5 38 193 226 189 232 0.72

2 4 8e-12 8.5e-09 34.4 0.0 4 39 242 276 240 283 0.85

3 4 0.084 89 2.3 0.0 21 35 310 324 296 329 0.79

4 4 2.8e-11 3e-08 32.7 0.1 4 39 354 389 351 393 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	9e-07	0.00096	18.2	0.0	5	38	193	226	189	232	0.72
2	4	8e-12	8.5e-09	34.4	0.0	4	39	242	276	240	283	0.85
3	4	0.084	89	2.3	0.0	21	35	310	324	296	329	0.79
4	4	2.8e-11	3e-08	32.7	0.1	4	39	354	389	351	393	0.94

Sequence Information

Coding Sequence: ATGACTGATACTAGCCAATGTAAATTCAATCAGAGTTACCGTTTTAAATGGAACAACTATCAGAATCATCTGTCTGACGTCGTGCGGCAGCTTTTGGAGGAGGACTGTATGGTGGATGTCACTCTATCCGCAGATGGTCAACGTATTCATGCGCATCGCATTGTATTATGCGCGTGTAGTATTTTGTTTcaaGAAGTGTTGAGTCAAGTTACAGAAGATTATCCAACGATTATTCTAAGCGATATATCTCCTCAggacataaaatcaattattgaatttatatatcatggCGAAATTCGTGTCCCTGTTGAAAATATCAATAGTTTACTTGAAGCTGCACgatcgttaaaaataaatggtcTTATTAATaTAGATGGAGTTGAagaaaacgaaattattagagtaaaaaaagaacgagCAATGGAAAAAACTGTATCAAGGGTAGAGGAAATTCAGGATAATGTTGAATCTTTGGAGAATGAAACTCATGAACCAAGTACTACTGAagattgtatttcaaataaaaagaagaaacgacGCCGTGACACTGTAAAGAGAGATTATAGTGATGATATGTTAGCATCTGCAATTAATGATTTGAAATTAGGACAAACTTTAATAGAAGCTGCTACTAAGCATAATATACCACGTTCAACATTGTATATGCGGGCGAAAGCATTAGGCATACATTTAAATGCATCAAGAAATGGATATCCTGCAGAATGCATGAATGCAGCTATAAACGCCGTGATCAATGGTTCGAGCTTGCAGCATGCATcagaaatatttagaataccTAAAACCGTATTATGGAGACGTATACAAAAGGAGGGCTATCAGATTTTACGTCGTGAAATGAAAAGGTCTTATGCTTTAGACACAAAAGAGGCTGCTGTTAAAGCTTTAGAAAGAGGGGAAAATTTGACAAAAGTTGCTTTGgagtttaaaATACCAAAGACTACATTGTTCAGAGAAAAGGCACGGCTAGTAGATCAAGGTAAACTACCGTTATCGTTTTGGAAGAAGCGCAAAACTGAGAATGAGGAATCAAAGAAATCGCGATTAGAGGAAGCTGTAGCTGCTTGCAAAGGTGGTAAAATGTCACAGGCTGCAGCATCCATGATGTATCGCATTCCAAAAACCACGATATGGCGAAGACTTCAACAAGATGGGAAAAAAGCGGAAAAATCATCGAATGTGAAAAAGCAACAACTAACCGACATGCCAGTCTTGCACGACTCTCAAGCGAAAATACAAGACACCTCCAATTTCAGTTATTGCGagAATGTGGTTACATCAGAAATACCTATAACTTATATAGACGAGGATAGTATACCTGAGGATTCTGTGATAATCTTAACAACGGAAGAAATGGATGAATTAAACTTGGAAGGAGGCAgacaaattattgtaaattcggaatCCGGACAGGAATATATTCCATGTACAATAAGTATCGAGAATAATTCTAACTATACCGAGACTGAGAGTTAA
Protein Sequence: MTDTSQCKFNQSYRFKWNNYQNHLSDVVRQLLEEDCMVDVTLSADGQRIHAHRIVLCACSILFQEVLSQVTEDYPTIILSDISPQDIKSIIEFIYHGEIRVPVENINSLLEAARSLKINGLINIDGVEENEIIRVKKERAMEKTVSRVEEIQDNVESLENETHEPSTTEDCISNKKKKRRRDTVKRDYSDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPAECMNAAINAVINGSSLQHASEIFRIPKTVLWRRIQKEGYQILRREMKRSYALDTKEAAVKALERGENLTKVALEFKIPKTTLFREKARLVDQGKLPLSFWKKRKTENEESKKSRLEEAVAACKGGKMSQAAASMMYRIPKTTIWRRLQQDGKKAEKSSNVKKQQLTDMPVLHDSQAKIQDTSNFSYCENVVTSEIPITYIDEDSIPEDSVIILTTEEMDELNLEGGRQIIVNSESGQEYIPCTISIENNSNYTETES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423555;
90% Identity: iTF_01477029;
80% Identity: iTF_00417707;