Fase002184.1
Basic Information
- Insect
- Formica aserva
- Gene Symbol
- ttk
- Assembly
- GCA_037039905.1
- Location
- JAXRKO010000001.1:15249088-15251572[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.3e-06 0.0037 18.4 0.0 5 40 193 228 189 233 0.72 2 5 5.1e-10 1.5e-06 29.3 0.0 4 39 242 276 240 283 0.85 3 5 0.16 4.6e+02 2.1 0.0 21 34 310 323 296 329 0.80 4 5 3 8.5e+03 -1.9 0.0 32 45 338 352 338 352 0.89 5 5 9.2e-12 2.6e-08 34.9 0.1 4 40 354 390 351 394 0.91
Sequence Information
- Coding Sequence
- ATGACTGACGTTGCTGGCCAGCGTAAAGTTAATCAGAGTTATCGCTTTAAATGGAGCGATTATCAAAACCATCTATCCGATGTCGTACGACAGTTGTTGGAGGAGGACTGTATGGTAGACGTCACTCTGTCCGCAGCTGGTCAACGTATTCACGCGCATCGCATCGTATTATGCGCATGCAGCACTTTGTTTAAAGAAGTTCTTAGTCAAGTGACAGAAGATTATCCAACAATTATTCTGAGTGATATATCACctcagaatataaaatcaattattgaattcATTTATCATGGCGAGGTTCGAATTCCtgtagataatattaatagtttaCTTGAGGCTGCGCAGTCGCTAAAAATAAGTGGTCTTGTCGATATAAATGGATTTGAAgaaaaaactattaaaaacataaaagaTTCTACGGAAGAAATTGTGACggaaatagataaaattgaagaaaatgcGGTTGGGTCTTTAGAGAATGACTTACATACACAAAGCATCATTGAAAATTGTACCTCAAATAAGAAGAAGAAACGTCGCCGCGAAACTACAAAGAGAGATTACAGCGATGACATGCTGGCTTCTGCaattaatgatttaaaattaggACAAACTTTAATAGAAGCTGCTACTAAGCACAATATACCACGCTCGACGCTATATATGAGGGCAAAAGCATTAGGCATACATTTAAATACATCAAGAAACGGATATCCCGCAGAATGTATGAGTGCAGCAATAACTGCTGTGATCAGTGGTTCAAGCTTACAACATGCATCAGAAATGTTCAGAATTCCTAAAACTGTGTTATGGAGACGCATACAAAAAGAGGGTTATCAGAACTTACGTTCTGAAACAAAAAGGTCATATGCTCTAGATACACGAGAGGCTGCTGTTAAAGCTTTGGAAAGAGGGGAGAATCTGACAAAAGTTGCATTAGaatttaaaaTACCAAAGACAACATTGTTTAGAGATAAAGCACGGTTAGTTGATCAAGGTAAATTGCCTTTGTCATTTTGGAAGAAACGCAAAACAGAAAATGAGGAATTGAAAAGATCGCGATTAGAAGAGGCTGTGGCTGCTTGCAAGGGTGGCAAAATGTCGCAAGCTGCAGCATCTATGACATACCATATTCCGAAAACTACGATATGGCGAAGGCTTCAACAAGAAGGGAAAAAAATGGGAAGACTATCAAATATGAAAAAACGACATCTGGGTGATATGCCACAGCATGATACTGAAGTAAAAATACAGGAAGGTTCCAGTTTTAGCTATTGTGAGgtTTCTTCAGAGATACCTATAACTTATATAGATGAGAATAGTATACCTGAAGATTCTGTAATAATCTTAACAACAGAGGAAATGGAACAATTGAATTTCGAAGAAGGAAGACAAATCATTGTAAATAcagAATCCGGGCAGGAATTTATTCCATGTACAATAAGTATTGAAGATAACTCAAACTATTCAGAAAGTGAaagttaa
- Protein Sequence
- MTDVAGQRKVNQSYRFKWSDYQNHLSDVVRQLLEEDCMVDVTLSAAGQRIHAHRIVLCACSTLFKEVLSQVTEDYPTIILSDISPQNIKSIIEFIYHGEVRIPVDNINSLLEAAQSLKISGLVDINGFEEKTIKNIKDSTEEIVTEIDKIEENAVGSLENDLHTQSIIENCTSNKKKKRRRETTKRDYSDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNTSRNGYPAECMSAAITAVISGSSLQHASEMFRIPKTVLWRRIQKEGYQNLRSETKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDQGKLPLSFWKKRKTENEELKRSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQEGKKMGRLSNMKKRHLGDMPQHDTEVKIQEGSSFSYCEVSSEIPITYIDENSIPEDSVIILTTEEMEQLNFEEGRQIIVNTESGQEFIPCTISIEDNSNYSESES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_00265130;
- 80% Identity
- iTF_00729447;