Basic Information

Insect: Leptothorax acervorum
Gene Symbol: ttk
Assembly: GCA_035220615.1
Location: JASTWQ010000098.1:228629-231051[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 4.7e-06 0.0047 18.0 0.0 8 38 196 226 189 232 0.71

2 5 5.1e-12 5.1e-09 37.1 0.0 4 43 242 281 240 283 0.86

3 5 0.83 8.4e+02 1.2 0.0 25 35 314 324 297 329 0.84

4 5 8.4 8.5e+03 -2.0 0.0 32 44 338 351 338 352 0.87

5 5 3.3e-10 3.4e-07 31.3 0.1 4 39 354 389 351 393 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	4.7e-06	0.0047	18.0	0.0	8	38	196	226	189	232	0.71
2	5	5.1e-12	5.1e-09	37.1	0.0	4	43	242	281	240	283	0.86
3	5	0.83	8.4e+02	1.2	0.0	25	35	314	324	297	329	0.84
4	5	8.4	8.5e+03	-2.0	0.0	32	44	338	351	338	352	0.87
5	5	3.3e-10	3.4e-07	31.3	0.1	4	39	354	389	351	393	0.93

Sequence Information

Coding Sequence: ATGACTAACGCTGGCCAGTGTAAAACCAATCAGAGTTATCGCTTTAAATGGAACAACCATCAGAATCATCTGTCCGACGTCGTGCGGCAGCTCTTGAAGGAGAACTGCATGGTGGATGTCACCCTGTCCGCAGCTGGTCAACGTATTCACGCGCATCGCATTGTATTATGCGCATGTAGCGTTTTGTTTCAGgaaGTGCTCAGTCAAGTGACGGAAGATTGTCCAACGATTATTCTAAGCGATATATCACCCCAggatataaaatcaattatcgAATTCATTTATCACGGTGAAATCCATGTTCCTGTCGAAGATATCCATAGCTTACTTGAGGCTGCACGATCGTTGAGAATAAGCGGTCTTGTTGACATAGATGGAGTTGAAGAGAACGAAATTGTTAAAAGTAAAAAGGATTTGAAGATGGAAGAGACTGCGACAGAGGTAAGGGAAGTTGAAGACAATGCTGGATCATTGGAGAATGACTCGCATGAACCGAGCACTGCTGAAAATTGTACGccgaataaaaagaagaaacgtcgCCGCGAGACTGTAAAGAAAGATTACAACGACGACATGTTGGCGTCTGCAATTAATGACTTGAAATTAGGACAGACTTTAATAGAGGCTGCTACTAAGCACAATATACCACGTTCAACGTTGTATATGCGGGCGAAAGCATTAGGCATACATTTACACGCATCAAGAAACGGATATCCCGCAGAGTGCATGAATGCAGCTATAAATGCCGTGATCAATGGCTCGAGCTTGCAGCATGCAGCAGAGATATTTAGAATACCTAAAACCGTGTTATGGAGGCGTATACAAAAGGAGGGCTATCAGACCCTACGTTCTGAAATGAGAAAGACTTATGCTTTAGACACAAGAGAGGCCGCTGTTAAAGCTTTggaaagaggggaaaatttGACAAAAGTTTCTCTGGAATTTAAAATACCAAAGACTACATTGTTTAGAGAAAAGGCACGGCTGGTAAATCAAGGTAAATTGCCGTTATCATTTTGGAAGAAACGCAAAAGTGAGAATGAGGAATTAAAAAAGTCGCGATTGGAAGAAGCTGTGGCTGCTTGCAAGGGTGGCAGAATGTCGCAAGCTGCAGCATCCATGACGTATCACATTCCAAAAACTACGATATGGCGAAGGCTTCAACAAGATGGGAAAAAGGTGGAAAAATCGAACGCAAAGAAGAAACAACGATTGACCAATACGCAAGTGCTTCACGACGCTCAGGTGAAGACGCAAGAAACATCCAATTTCAATTATTGTGAGGTTACATCGGAAATACCTATAACTTATATAGATGAGAATAGCATACCTGAGGATTCCGTGATAATCTTGACAACGGAGGATATGGATGAACTGAATCTGGAGGGAGGCAaacaaattattgtaaattcgGAATCTGGACAGGAATATATTCCATATACGATAAGTATCGAAGATAGCTCAAACTATTCGGGGGCTGAGAGTTAG
Protein Sequence: MTNAGQCKTNQSYRFKWNNHQNHLSDVVRQLLKENCMVDVTLSAAGQRIHAHRIVLCACSVLFQEVLSQVTEDCPTIILSDISPQDIKSIIEFIYHGEIHVPVEDIHSLLEAARSLRISGLVDIDGVEENEIVKSKKDLKMEETATEVREVEDNAGSLENDSHEPSTAENCTPNKKKKRRRETVKKDYNDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLHASRNGYPAECMNAAINAVINGSSLQHAAEIFRIPKTVLWRRIQKEGYQTLRSEMRKTYALDTREAAVKALERGENLTKVSLEFKIPKTTLFREKARLVNQGKLPLSFWKKRKSENEELKKSRLEEAVAACKGGRMSQAAASMTYHIPKTTIWRRLQQDGKKVEKSNAKKKQRLTNTQVLHDAQVKTQETSNFNYCEVTSEIPITYIDENSIPEDSVIILTTEDMDELNLEGGKQIIVNSESGQEYIPYTISIEDSSNYSGAES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423555;
90% Identity: iTF_00765777;
80% Identity: iTF_00885276;