Waur011715.1
Basic Information
- Insect
- Wasmannia auropunctata
- Gene Symbol
- -
- Assembly
- GCA_000956235.1
- Location
- NW:1541690-1546182[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.8 4.1e+03 -3.0 1.3 35 45 218 228 217 228 0.91 2 5 1.1e-06 0.0012 17.9 0.0 8 38 238 268 231 274 0.71 3 5 8.8e-12 9.6e-09 34.3 0.0 4 39 284 318 282 325 0.85 4 5 0.092 1e+02 2.2 0.0 21 35 352 366 338 371 0.79 5 5 2e-10 2.1e-07 29.9 0.1 4 39 396 431 393 435 0.93
Sequence Information
- Coding Sequence
- ATGGTTTGTTGTGAGAGGAGGATATTTAATGCAAGAgttctttgtgataatacaGCGATCTGTAACTTCCGAGTTTTTCACTCGGCTCCCGCATGTCCGTCTGGGAGAGGAGATAAAAACAGCGACAGCATGACCGACGCCGGCCAATGTGAGGTCAACGAGAGCTATCGTTTCAAATGGAACAACTATCAGAATCATCTGTCCGACGTCGTGCGGCAGCTCCTGGAGGAGGATTGCATGGTGGATGTCACCCTATCCGCAGCTGGTCAACGTATACACGCGCATCGCATTGTATTGTGCGCGTGTAGCATTTTGTTTCAGgAAGTGCTCAGTCAAGTGACGGAAGATTATCCAACGATAATTTTAAGCGATATATCTCCTCAGgacataaaattgattatcgAATTCATATATCATGGTGAGATCCATGTTCCCGTCGAAAATATCAGGAGCTTATTTGAGGCCGCGCGATCGCTAAAAATAAGCGGTCTTCATGACATAGATGGAATTGGAGAGAGCGAGATTTTTAGAGGCAGAAAAGATTCTACGGAAGAGACCGCGACGGAGGTGGGAGAGGTCGAGAACAAGGCTGGATCCGCGGAGAGTGAGTCGCAGGAGCCGAGCGCCGctgaaaattgtatttcaaataagaaGAGGAAACGTCGCCGCGAGACTGTGAAGAGGGATTACAATGACGACATGTTGGCGTCCGCGATTAATGACTTGAAGTTGGGTCAAACCCTAATAGAGGCTGCCACTAAGCACAACATACCGCGCTCGACGTTGTACATGCGGGCGAAGGCTTTAGGCATACATTTAAACGCGTCGAGGAATGGATATCCCGCAGAGTGCATGAATGCGGCTATAAACGCCGTTATCAACGGTTCGAGCTTGCAGCATGCGTcggaaatatttagaataccTAAAACCGTGCTGTGGCGACGTATACAAAAGGAGGGCTATCAAATCCTACGGCCTGAAATGAAGAGGTCTTATGCCTTGGACACGAGAGAGGCCGCCGTCAAGGCTCTAGAAAGAGGGGAAAATCTGACGAAAGTTGCTCTggaatttaaaATACCAAAGACTACATTGTTTAGAGAAAAGGCACGGCTGGTAGATCAAGGTAAATTGCCGCTGTCCTTCTGGAAGAAGCGCAAAACTGAGAACGAGGAATTGAAGAAGTCGCGACTGGAGGAAGCCGTGGCCGCCTGCAAGGGCGGCAGAATGTCGCAGGCCGCGGCGTCCATGACGTATCGCATTCCAAAGACGACGATATGGCGAAGGCTCCAGCAGGACGGGAAGAAAGCGGAGAAATCGTCGAATGTGAAGAAGCAACAGCGGCTGGCCGATGCGCCGGTAGTGCACGACGCTCAGGTGAAGCTACAGGACACGTCCAATTTCAATTATTGCGAGGTTACATCGGAAATACCTATAACTTATATAGACGAGAACAGTATACCCGAGGATTCCGTGATAATTTTGACAACGGAGGAGATGGATGAATTGAATTTGGAGGGAGGCAGgcaaattattgtaaattcgGAGTCCGGACAGGAGTTTATTCCGTGTACGATAAGTATCGAGGATAATTCAAACTATTCGGAGGCTGGGAGTTAg
- Protein Sequence
- MVCCERRIFNARVLCDNTAICNFRVFHSAPACPSGRGDKNSDSMTDAGQCEVNESYRFKWNNYQNHLSDVVRQLLEEDCMVDVTLSAAGQRIHAHRIVLCACSILFQEVLSQVTEDYPTIILSDISPQDIKLIIEFIYHGEIHVPVENIRSLFEAARSLKISGLHDIDGIGESEIFRGRKDSTEETATEVGEVENKAGSAESESQEPSAAENCISNKKRKRRRETVKRDYNDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPAECMNAAINAVINGSSLQHASEIFRIPKTVLWRRIQKEGYQILRPEMKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFREKARLVDQGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGRMSQAAASMTYRIPKTTIWRRLQQDGKKAEKSSNVKKQQRLADAPVVHDAQVKLQDTSNFNYCEVTSEIPITYIDENSIPEDSVIILTTEEMDELNLEGGRQIIVNSESGQEFIPCTISIEDNSNYSEAGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_01523501;
- 80% Identity
- iTF_01523501;