Cflo008759.1
Basic Information
- Insect
- Camponotus floridanus
- Gene Symbol
- ttk
- Assembly
- GCA_003227725.1
- Location
- NW:657047-661151[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.6e-07 0.00098 18.2 0.0 5 38 193 226 189 232 0.72 2 4 2.4e-10 3.5e-07 29.2 0.0 4 39 242 276 240 283 0.85 3 4 0.072 1.1e+02 2.1 0.0 21 34 310 323 296 329 0.80 4 4 5.7e-12 8.5e-09 34.4 0.1 4 40 354 390 351 394 0.92
Sequence Information
- Coding Sequence
- ATGACTGACATCGTCGACCAGCGTAAAGTCAATCAGAGTTATCGCTTTAAATGGAGCGATTATCAGAATCACCTGTCCGATGTCGTGAGGCAGCTTCTGGAGGAGGACTGTATGGTAGACGTCACTCTGTCCGCAGCTGGGCATCGTATTCACGCGCATCGTATCGTATTGTGCGCTTGCAGCACTTTGTTTCAAGAAGTTCTCAGTCAAGTGACAGAAGATTATCCGACGATTATTCTGAGTGGCATATCACCTGAAGatataaaatcgattattgaatttatttatcacgGCGAAGTTCGGATTCCtgtagataatattaatagcttACTCGAGGCTGCACAGTCGCTAAAAATAAGTGGGCTTGTCGATatAAATGGATTTGAGGAAAAAgctattaaaagtataaaagattCTACGGAAGAAACTGTCACAGAAGGagataaaattgaagaaaatgcAGTTGGATCTTTGGAGAATGACTTGCACGCGCAAAACACCATTGAAAATTGCATCTCAAATAAGAAGAAGAAACGTCGCCGCGAAACCGCAAAGAGAGATTACAGCGACGACATGTTGGCTTCtgcaattaatgatttaaaattaggACAAACTTTAATAGAAGCTGCTACTAAGCACAATATACCACGCTCAACCCTGTACATGCGAGCAAAAGCATTGGGCATACATTTAAATGCATCAAGAAACGGATATCCTGCAGAATGTATGAGTGCAGCGATAACTGCCGTAATCAgtGGTTCAAGCTTACAACATGCATCAGAAATGTTTAGAATTCCTAAAACTGTGTTATGGAGACGCATACAAAAAGAGGGATATCAGATCTTGCGTCCTGAGACAAAGAGATCATATGCTTTGGACACACGAGAGGCTGCTGTTAAAGCTTTGGAAAGAGGAGAGAATCTGACAAAAGTTGCTCTAGAATTTAAAataccAAAGACTACATTGTTTAGAGATAAAGCACGTCTGGTAGATCAAGGTAAATTGCCCTTGTCGTTTTGGAAGAAACGCAAAACGGAAAATGAGGAATTGAAAAAGTCGCGATTAGAAGAAGCTGTGGCAGCTTGCAAGGGTGGCAAAATGTCGCAAGCCGCAGCATCTATGACGTACCATATTCCGAAAACTACGATATGGCGAAGACTTCAACAAGAGGGGAAAAAAATGGGAAGACTGTCAAACGTAAAAAAACGACAACAACACGTGATTAATGTGCCACAGCACGATACTGAGATAAAAATACAGGAAGACTCTAGTTTTAGCTATTGTGAGGTTTCTTCGGAGATACCTATAACTTATATAGATGAGAATAATATGCCTGAAGATTCTGTAATAATCTTGGCGACAGAGGGAATGGAGCAGTTGAATTTCGAAGAAGGAAGACAAATTATTGTGAATGCAGTATGTCAAGAATCCGGACAGGAATACATTCCGTGTACAATAAGTATTGAAGATAGTTCAAATTATTCAGAAAGTgaaagttaa
- Protein Sequence
- MTDIVDQRKVNQSYRFKWSDYQNHLSDVVRQLLEEDCMVDVTLSAAGHRIHAHRIVLCACSTLFQEVLSQVTEDYPTIILSGISPEDIKSIIEFIYHGEVRIPVDNINSLLEAAQSLKISGLVDINGFEEKAIKSIKDSTEETVTEGDKIEENAVGSLENDLHAQNTIENCISNKKKKRRRETAKRDYSDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPAECMSAAITAVISGSSLQHASEMFRIPKTVLWRRIQKEGYQILRPETKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDQGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQEGKKMGRLSNVKKRQQHVINVPQHDTEIKIQEDSSFSYCEVSSEIPITYIDENNMPEDSVIILATEGMEQLNFEEGRQIIVNAVCQESGQEYIPCTISIEDSSNYSESES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_00265130;
- 80% Identity
- iTF_00265130;