Acoo005466.1
Basic Information
- Insect
- Atta colombica
- Gene Symbol
- ttk
- Assembly
- GCA_001594045.1
- Location
- NW:1176061-1179602[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.3e-07 0.00081 18.2 0.0 5 38 193 226 189 232 0.72 2 4 6.5e-12 7.2e-09 34.4 0.0 4 39 242 276 240 283 0.85 3 4 0.066 73 2.4 0.0 21 35 310 324 296 330 0.79 4 4 2.2e-11 2.4e-08 32.7 0.1 4 39 354 389 351 393 0.93
Sequence Information
- Coding Sequence
- ATGACTGATACTAGCCAATGTAAAGTCAATCAGAGTTACCGTTTTAAATGGaacaattatcaaaatcatctGTCTAATGTCGTGCGGCAACTCTTGGAGGAGGATTGCATGGTGGATGTCACTCTATCCGCAGATGGTCAACGTATTCATGCGCATCGCATTGTATTATGCGCGTGTAGTATTTTGtttcaaGAAGTGCTAAGTCAAGTGACAGAAGATTATCCAACAATTATTCTAAGTGATATATCTCCTCAGGATATAAAGTCGATTATCGAATTCATATATCATGGAGAAATTTGTGTTCCTGTTGAAAATATCAGTAGCTTACTTGAAGCTGCaagatcattaaaaataaatggtcTTATTAACATAGATGGAGtgtatgaaaatgaaattgttaaaggaaaaaaagatcaaGCAATGGAAGAAACTGTGTCAAGAGTAGAGGAAATTCAGGACAATGCTGAACCTTTGGAGAATGAAATTCATGAACCAAGCACTGctgaaaattgtatttcaaataaaaagaagaaacgacGCCGTGACACTGTAAAGAGAGAATATAGTGATGATATGTTAGCGTCTGCGATTAATGATTTGAAATTAGGACAAACTTTAATAGAAGCTGCTACTAAGCACAATATACCACGTTCAACGTTGTATATGCGGGCAAAAGCATTAGGCATACATTTAAATGCATCAAGAAATGGATATCCTGCAGAATGCATGAATGCAGCTATAAACGCCGTGATCAATGGTTCGAGCTTGCAGCATGcatcagaaatatttagaataccTAAAACTGTATTATGGAGACGTATACAAAAGGAAGGCTATCAGATTTTACGTCGTCAAATGAAAAGATCGTATGCTTTAGACACGAAAGAAGCCGCTGTTAAAGCTTTAGAAAGAGGAGAAAATTTGACAAAAGTTGCTCTGgagtttaaaataccaAAGACTACATTGTTTAGAGAAAAGGCACGGCTAGTAAATCAAGGTAAATTACCATTATCGTTTTGGAAGAAGCGCAAACCTGAGAATGAGGAATCAAAGAAGTCGCGATTAGAAGAGGCTGTAGCAGCTTGCAAAGGTGGCAGAATGTCGCAGGCTGCAGCGTCTGTGATGTATCACATTCCAAAAACTACGATATGGCGAAGGCTTCAACAAGATGGAAAAAAAGCGGAAAAATCATCGAATGTGAAAAAGGAACGACTAACTGATACACCAGTACTGCATGACTCTCAGGTGAAAATACAAGACACGTCCAATTTCAGTTATTGCGAGGTTGCATCAGAAATACCTATAACTTATATAGACGAGGATAGTATACCTCAGGATTCCGTCATAATCCTAACAACGGAAGAAATGGATGAATTAAACTTGGAAGGAGGTAgacaaattattgtaaattcggAGTCCGGACAGGAATATATTCCATGTACGATaagtattgaaaataattctaactATTCCGAGACTGAGAGTTAG
- Protein Sequence
- MTDTSQCKVNQSYRFKWNNYQNHLSNVVRQLLEEDCMVDVTLSADGQRIHAHRIVLCACSILFQEVLSQVTEDYPTIILSDISPQDIKSIIEFIYHGEICVPVENISSLLEAARSLKINGLINIDGVYENEIVKGKKDQAMEETVSRVEEIQDNAEPLENEIHEPSTAENCISNKKKKRRRDTVKREYSDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPAECMNAAINAVINGSSLQHASEIFRIPKTVLWRRIQKEGYQILRRQMKRSYALDTKEAAVKALERGENLTKVALEFKIPKTTLFREKARLVNQGKLPLSFWKKRKPENEESKKSRLEEAVAACKGGRMSQAAASVMYHIPKTTIWRRLQQDGKKAEKSSNVKKERLTDTPVLHDSQVKIQDTSNFSYCEVASEIPITYIDEDSIPQDSVIILTTEEMDELNLEGGRQIIVNSESGQEYIPCTISIENNSNYSETES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_01477029;
- 80% Identity
- iTF_00181415; iTF_00181229; iTF_00182076;