Basic Information

Insect: Polyergus mexicanus
Gene Symbol: ttk
Assembly: GCA_030449975.1
Location: JAUDSZ010000005.1:426446-428953[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.2e-06 0.0033 18.4 0.0 5 40 193 228 189 233 0.72

2 5 3.6e-10 1e-06 29.6 0.0 4 39 242 276 240 283 0.86

3 5 0.14 4.2e+02 2.1 0.0 21 34 310 323 296 329 0.80

4 5 2.6 7.6e+03 -2.0 0.0 32 45 338 352 338 352 0.89

5 5 8.2e-12 2.4e-08 34.9 0.1 4 40 354 390 351 394 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.2e-06	0.0033	18.4	0.0	5	40	193	228	189	233	0.72
2	5	3.6e-10	1e-06	29.6	0.0	4	39	242	276	240	283	0.86
3	5	0.14	4.2e+02	2.1	0.0	21	34	310	323	296	329	0.80
4	5	2.6	7.6e+03	-2.0	0.0	32	45	338	352	338	352	0.89
5	5	8.2e-12	2.4e-08	34.9	0.1	4	40	354	390	351	394	0.91

Sequence Information

Coding Sequence: ATGACTGACGTCGCTGGCCAGCGTAAAGTTAATCAGAGTTATCGCTTTAAATGGAGCGATTATCAAAACCACCTGTCCGATGTCGTACGACAGTTGTTGGAGGAGGATTGTATGGTAGACGTCACTCTGTCCGCAGCTGGTCAACGTATTCACGCGCATCGCATCGTATTATGCGCATGCAGCACTTTGTTTAAAGAAGTTCTTAGTCAAGTGACAGAAGATTATCCAACAATTATTCTGAGTGATATATCACctcagaatataaaatcaattattgaaTTCATTTATCATGGCGAGGTTCGAATTCCtgtagataatattaatagctTACTTGAGGCTGCGCAATCGCTAAAAATAAGTGGTCTTATCGATatAAATGGATTTGAAggaaaaactattaaaaacataaaagaTTCTACGGAAGAAATAGTGACggaaatagataaaattgaagaaaCTGCAGTTGGATCTTTAGAGAATGACTTACATACGCAAAGCATCATTGAAAATTGTACCTCAaataagaagaagaaacgTCGCCGCGAAACTACAAAGAGAGATTACAGCGATGACATGCTAGCTTCTGCaattaatgatttaaaattagGACAAACTTTAATAGAAGCTGCTACTAAGCATAATATACCACGCTCGACGCTATATATGAGGGCAAAAGCATTAGGCATACATTTAAATACATCAAGAAACGGATATCCCGCAGAATGTATGACTGCAGCAATAACAGCTGTGATCAGTGGTTCAAGCTTACAACATGCATCAGAAATGTTCAGAATTCCTAAAACTGTCTTATGGAGACGCATACAAAAAGAGGGTTATCAGAACTTACGTTCTGAAACAAAGAGATCATATGCTTTAGATACACGAGAGGCTGCTGTTAAAGCTTTGGAAAGAGGGGAGAATCTGACAAAAGTTGCACTAGAATTTAAAatacCAAAGACAACGTTGTTTAGAGATAAAGCACGGCTAGTTGATCAAGGTAAATTGCCTTTGTCATTTTGGAAGAAACGCAAAACAGAAAACGAGGAATTGAAAAGATCGCGATTAGAAGAGGCTGTGGCTGCTTGCAAGGGTGGCAAAATGTCGCAAGCTGCAGCATCTATGACATATCATATTCCGAAAACTACGATATGGCGAAGGCTTCAACAAGAAGGGAAAAAAATGGGAAGACTATCAAATATGAAAAAACGACGACAACAACATCTGGGTGATATGCCACAGCACGATACTGAAGTAAAAATACAGGAAGGCTCCAGTTTTAGCTATTGTGAGGTTTCTTCGGAGATACCTATAACTTATATAGACGAGAATAGTATACCTGAAGATTCTGTAATAATCTTAACAACAGAGGAAATGGAACAATTGAATTTCGAAGAAGGAAGacaaattattgtaaatacagAATCCGGGCAGGAATTCATTCCATGTACAATAAGTATTGAAGATAACTCAAACTATTCAGAAAGTGAaagttaa
Protein Sequence: MTDVAGQRKVNQSYRFKWSDYQNHLSDVVRQLLEEDCMVDVTLSAAGQRIHAHRIVLCACSTLFKEVLSQVTEDYPTIILSDISPQNIKSIIEFIYHGEVRIPVDNINSLLEAAQSLKISGLIDINGFEGKTIKNIKDSTEEIVTEIDKIEETAVGSLENDLHTQSIIENCTSNKKKKRRRETTKRDYSDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNTSRNGYPAECMTAAITAVISGSSLQHASEMFRIPKTVLWRRIQKEGYQNLRSETKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDQGKLPLSFWKKRKTENEELKRSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQEGKKMGRLSNMKKRRQQHLGDMPQHDTEVKIQEGSSFSYCEVSSEIPITYIDENSIPEDSVIILTTEEMEQLNFEEGRQIIVNTESGQEFIPCTISIEDNSNYSESES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423555;
90% Identity: iTF_00265130;
80% Identity: iTF_01245331;