Lful028936.1
Basic Information
- Insect
- Lasius fuliginosus
- Gene Symbol
- ttk
- Assembly
- GCA_949152495.1
- Location
- OX424453.1:3034509-3036897[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.5e-06 0.0033 18.2 0.0 5 38 193 226 189 232 0.72 2 5 5.3e-10 1.2e-06 29.3 0.0 4 39 242 276 240 283 0.85 3 5 0.15 3.4e+02 2.2 0.0 21 34 310 323 296 329 0.79 4 5 4.8 1.1e+04 -2.6 0.0 32 44 338 351 338 352 0.83 5 5 4.1e-11 9.2e-08 32.8 0.1 4 39 354 389 351 393 0.93
Sequence Information
- Coding Sequence
- ATGACTGACGTCGCTGGCCAGCGTAAAGTCAATCAGAGTTATCGCTTTAAATGGAACGATTATCAGAATCACCTATCCGATGTCGTGCGACAACTCTTGGAGGAGGATTGCATGGTAGACGTCACACTGTCCGCAGATGGTCAACGTATTCATGCGCATCGCATCGTATTATGCGCTTGCAGCACCTTGTTTCAAGAAGTTCTTAGTCAAGTGACAGAAGATTGTCCAACGATTATTCTGAGCGATATATCTCCTCAggatataaaatcaattattgaATTCATTTATCACGGCGAGGTTCGAATTCCtgtagataatattaatagcttGCTCGAGGCTGCACAGTCTCTAAAGATAAGCGGTCTGGTCGATATAAATggatttgaagaaaaatcCATTAGAAGTATAAAAGATTCTACAGAAGAAACTACAACAGAAATAGAtcaaattgaagaaaatgcaGTTGGATCTTTAGAGAATGACTTGCATGCACAAGGTACCGTTGAAAATTGTATCTcaaatagaaagaagaaacgtCGCCGCGAGACTGCAAAGAGAGATTACAGCGATGACATGTTGGCTTCTGCAATTAATGACTTAAAATTGGGACAAACTTTAATAGAAGCTGCTACTAAGCACAATATACCACGCTCGACACTATACATGCGGGCAAAAGCATTAGGCATACATTTAAATGCATCAAGAAACGGATATCCTGCAGAATGTATGAGTGCAGCAATAACTGCTGTAATCAGCGGTTCAAGCTTACAACATGCATCAGAAATGTTTAGAATTCCTAAAACTGTGTTATGGAGACGTATACAAAAAGAGGGTTATCAGATCTTGCGTCCTGAAACAAAGAGGTCGTATGCTTTAGATACGCGAGAGGCTGCTGTTAAAGCTTTGGAAAAAGGGGAGAATCTGACAAAAGTTGCATTagaatttaaaatACCAAAGACTACATTGTTTAGAGACAAAGCACGATTAGTAGATCAAGGTAAATTGCCTGTGTCGTTTTGGAAGAGACGCAAAACAGAAAATGAGGAACTGAAAAAATCGCGATTAGAAGAGGCTGTGGCTGCTTGCAAGGGTGGCAAAATGTCGCAAGCTGCAGCGTCTATGACATATCGTATTCCGAAAACTACGATATGGCGAAGGCTTCAAcaagagggaaaaaaaataggaaGACTGTCGAATATAAAAAAGCGACAACAACATCTGATTGGTATGCCACAGCACGATACTGAGATAAAAATACAGGAAGGCTCCAGTTTTAGCTATTGCGAAgttTCTTCAGAAATACCTATAACTTATATAGATGAGAATAATATACCTGAAAATTCCGTAATAATCTTAACAACGGAGGAAATGGAGGAATTGAatttggaagaaggaagaCAAATCATTGTAAATGcaGAATCTGGGCAGGAATATATTCCATGTACAATAAGTATTGAAGATAGCTCAAACTATTCAGAAAGTGAAAgttag
- Protein Sequence
- MTDVAGQRKVNQSYRFKWNDYQNHLSDVVRQLLEEDCMVDVTLSADGQRIHAHRIVLCACSTLFQEVLSQVTEDCPTIILSDISPQDIKSIIEFIYHGEVRIPVDNINSLLEAAQSLKISGLVDINGFEEKSIRSIKDSTEETTTEIDQIEENAVGSLENDLHAQGTVENCISNRKKKRRRETAKRDYSDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPAECMSAAITAVISGSSLQHASEMFRIPKTVLWRRIQKEGYQILRPETKRSYALDTREAAVKALEKGENLTKVALEFKIPKTTLFRDKARLVDQGKLPVSFWKRRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYRIPKTTIWRRLQQEGKKIGRLSNIKKRQQHLIGMPQHDTEIKIQEGSSFSYCEVSSEIPITYIDENNIPENSVIILTTEEMEELNLEEGRQIIVNAESGQEYIPCTISIEDSSNYSESES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_00265130;
- 80% Identity
- iTF_00867548;