Clev023968.1
Basic Information
- Insect
- Crematogaster levior
- Gene Symbol
- ttk
- Assembly
- GCA_901521435.1
- Location
- CABEGB010000666.1:490473-493501[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.2e-07 0.00025 21.6 0.0 2 38 189 225 188 231 0.84 2 4 1.2e-10 6.8e-08 33.0 0.0 4 39 241 275 239 280 0.91 3 4 0.37 2.2e+02 2.6 0.0 21 35 309 323 295 330 0.79 4 4 4.5e-10 2.6e-07 31.1 0.0 4 39 353 388 350 392 0.94
Sequence Information
- Coding Sequence
- ATGACTGACGCTGGCCAATATAAAGTGAAAAAGAGTTATCACTTTAAATGGAACAATTATCAAAATCACCTGTCCGACGTTGTACGGCAGCTCTTGGAAGAGGATTGCATGGTGGATGTCATCCTGTCTGCAGCTGGTCAACGTATTCATGCGCATCGCATTGTATTATGCGCATGTAGCATTTTGTTTCAAgaAGTGCTGAGCCAAGTGACGGAAGATTATCCAACGATTATTCTAAGTGATATATCACCTCAggatataaaatcaattattgaatttatatatcatgGTGAAATCCGTGTTCCCATTGAAAATATCAGTAGCTTACTTGAAGCTGCACAATCGTTAAAAATAAGCGGTCTTGTCGATATAGAGGGAGTTGGAGAGAACGAAAATATCAGTAGCAGAAAGGATTCTACGGAAGAGACAGAGGTAGGGGAAATTGAAGACAATACTGGATCCTTGGAGAATGACTCTCATGAACCGAGCACTGCTGAAAATTGTAGtttaaataagaagaaaaaacgcCGCcatgagaaaataaaactaaaaagatattacaacGACGACATGTTGGCGTCTGCAATTAATGACTTGAAATCAGGACAGACTCTAGTAGAGGCTGCTACTAAACACAATATACCACGCTCAACGTTGTACATGCGAGCGAAAGCACTAGGCATACATTTAACTGCAACAAGAAATGGATATCCCGCAGAGTGTATGAATGCAGCTATAAATGCTGTGATCAATGGCTCGAGTTTGCAGCATGCATCAGAGTTATTTAGAATACCTAAAACCGTCTTGTGGAGGCGTCTACAAAAGGAGGATTATCAGAATCTACGTCCTGAAATGAAGAGGTCGTATGCTTTAGACACCAGAGAGGCTGCTGTTAAAGCTTTAGAAAGAGGGGAAAATCTGACAAAAGTTGCTCTggaatttaaaATACCAAAGACTACATTGTTTAGAGAAAAGACACGGCTAGTACATCAAGGTAAATTGCCGTtatcatttttgaaaaaacgcAAAACTGAGAATGAGGCATTAAAAAAGTCGCGATTAGAAGAAGCTGTGGCTGCTTGCAAGGATGGTAGGATGTCGCAAGCCACAGCATCCATGACGTATCACATTCCAAAGACTACGATATGGCGAAGACTTCAACAAGATGGGAAGAAAGTGGAAAAATCGAACGTGAAGAAGCAACAACAATTGATCAGTACTCCAATACTGCATGACGTTCAGAAGATGCAAGAAACATCCAATTTCAGTTATTGTGAGGAAATACCTATAACTTATATAGATGAGAATAGCATACCCGAGAATTCCGTGATAATTTTAACAACGGAGGAAATGGATGAACTAAATCTAGAGGGAGGCAgacaaattattgtaaattcgGAATCTGGACAGGAATATATTCCATGTACGATAAGCATTGAAGATAACTCGAACTATTCGGGGGCTGAGAGTTAA
- Protein Sequence
- MTDAGQYKVKKSYHFKWNNYQNHLSDVVRQLLEEDCMVDVILSAAGQRIHAHRIVLCACSILFQEVLSQVTEDYPTIILSDISPQDIKSIIEFIYHGEIRVPIENISSLLEAAQSLKISGLVDIEGVGENENISSRKDSTEETEVGEIEDNTGSLENDSHEPSTAENCSLNKKKKRRHEKIKLKRYYNDDMLASAINDLKSGQTLVEAATKHNIPRSTLYMRAKALGIHLTATRNGYPAECMNAAINAVINGSSLQHASELFRIPKTVLWRRLQKEDYQNLRPEMKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFREKTRLVHQGKLPLSFLKKRKTENEALKKSRLEEAVAACKDGRMSQATASMTYHIPKTTIWRRLQQDGKKVEKSNVKKQQQLISTPILHDVQKMQETSNFSYCEEIPITYIDENSIPENSVIILTTEEMDELNLEGGRQIIVNSESGQEYIPCTISIEDNSNYSGAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_00385681;
- 80% Identity
- iTF_00385681;