Trug041533.1
Basic Information
- Insect
- Temnothorax rugatulus
- Gene Symbol
- ttk
- Assembly
- GCA_035220575.1
- Location
- JASTWL010002067.1:2105952-2108330[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 4.2e-06 0.0045 18.1 0.0 8 38 195 225 188 231 0.71 2 5 1.8e-11 1.9e-08 35.2 0.0 4 43 241 280 239 282 0.86 3 5 0.75 8e+02 1.2 0.0 23 35 311 323 295 328 0.78 4 5 7.7 8.3e+03 -2.0 0.0 32 44 337 350 337 351 0.87 5 5 6.2e-10 6.6e-07 30.3 0.1 4 39 353 388 350 392 0.93
Sequence Information
- Coding Sequence
- ATGACCGACGCTGGCCAATGTAAAGTCAATCAGAATTATCGCTTTAAATGGAACAACTATCAGAATCATCTGTCCGACGTCGTGCGGCAGCTCTTGAAGGAGGACTGCATGGTGGATGTCATTCTGTCCGCAGCCGGTCAACGTATTCACGCGCATCGCATTGTACTGTGCGCGTGTAGCattttgtttcaagAAGTGCTCAGTCAAGTGACAGAAGATTGTCCAACGATTATTCTAAGTGATATATCACCTCAggatataaaatcaattatcgAATTCATGTATCACGGTGAGATCCGTGTTCCCGTTGAAAATATCAGTAGTTTGCTTGAAGCTGCACGATCGCTAAAAATAAACGGTCTTATCAACATAAATGGAATTGGAGAGAACGAAGTTGTTAAAAGCAGAAAGGATTCTACAGAAGAGACTGCGACAGAGGTAGGAAAAATTGGAGACAATGCTGAATCCTTGGAGAATGACTCGCATGAAGCGAGTACTGCTGAAAATTGTATATCAagtaaaaagaagaaacgtCGCCGCGAGACTGTAAAGAAAGATTACAACGACGACATGTTGGCGTCTGCAATTAATGACTTGAAATTAGGACAGACTTTAATAGAGGCTGCTACTAAGCACAATATACCACGTTCAACGTTGTATATGCGAGCGAAAGCATTAGGCATACATCTAAACGCATCAAGAAACGGATATCCCGCAGAGTGCATGAATGCAGCTATAAATGCCGTGATCAATGGCTCGAGCTTGCAGCATGCATCAGAGATATTTAGAATACCTAAAACCGTGTTGTGGAGGCGTATACAAAAGGAAGGCTATCAGACCCTACGTCCTGAAATGAAGAGGTCGTATGGTTTAGACACGAGACAGGCCGCTGTTAAAGCTTTAGAAAGAGGGGAAAATTTAACAAAAGTTGCTCtgcaatttaaaATACCAAAGACTACATTGTTTAGAGAAAAGGCACGGCTGGTAGATCAAGGTAAATTGCCGTTATCGTTTTGGAAGAAACGCAAATCCGAGAATGAGGAATTAAAGAAGTCGCGATTGGAAGAAGCTGTGGCTGCTTGCAAGGGTGGCAGAATGTCGCAAGCCGCAGCATCCATGACGTATCGCATTCCAAAAACTACGATATGGCGAAGGCTTCAACAGGAAGGGAAGAAGGTGGAAAGATCGTCGAATGCGAAGAAGAAACAACGATCGCCCGATACGCCAGTGCTGCACGACGCTCAGGTGAAGACGCAAGAAACATCCAATTTCAGTTATTGTGAGGTTGCATCGGAAATACCTATAACTTATATAGATGAGGATAGTATACCTGAGGATTCCGTGATAATATTAACAACGGAGGACATGGACGAACTGAATCTGGAGGGAGGCAgacaaattattgtaaattcGGAATCTGGACAGGAATATATTCCATATACGATAAGTATCGAAGATAGCTCAAACTATTCGGGGGCTGAGAGTTAG
- Protein Sequence
- MTDAGQCKVNQNYRFKWNNYQNHLSDVVRQLLKEDCMVDVILSAAGQRIHAHRIVLCACSILFQEVLSQVTEDCPTIILSDISPQDIKSIIEFMYHGEIRVPVENISSLLEAARSLKINGLININGIGENEVVKSRKDSTEETATEVGKIGDNAESLENDSHEASTAENCISSKKKKRRRETVKKDYNDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPAECMNAAINAVINGSSLQHASEIFRIPKTVLWRRIQKEGYQTLRPEMKRSYGLDTRQAAVKALERGENLTKVALQFKIPKTTLFREKARLVDQGKLPLSFWKKRKSENEELKKSRLEEAVAACKGGRMSQAAASMTYRIPKTTIWRRLQQEGKKVERSSNAKKKQRSPDTPVLHDAQVKTQETSNFSYCEVASEIPITYIDEDSIPEDSVIILTTEDMDELNLEGGRQIIVNSESGQEYIPYTISIEDSSNYSGAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_01405898;
- 80% Identity
- iTF_01408406;