Tbic000577.1
Basic Information
- Insect
- Tetramorium bicarinatum
- Gene Symbol
- ttk
- Assembly
- GCA_011636605.1
- Location
- VBVP01003188.1:3626-6916[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.3e-07 0.00052 20.2 0.0 20 38 203 222 187 228 0.77 2 5 6.9e-12 1.1e-08 35.2 0.0 4 43 238 277 236 279 0.86 3 5 0.44 6.8e+02 0.6 0.0 30 43 275 289 274 291 0.89 4 5 0.12 1.9e+02 2.4 0.0 21 35 307 321 293 326 0.78 5 5 5.2e-11 8.2e-08 32.4 0.1 4 40 351 387 348 392 0.91
Sequence Information
- Coding Sequence
- ATGACTGACGATGGCCAATGTAAAATCAATCAGAGTTATCGCTTTAAATGGAACAACTATCAGAATCATCTGTCCAACGTCGTGCGACAGCTCTTGGAGGAGGACTGCATGGTGGATGTCACCCTATCCGCAGCTGGTCAACGTATTCATGCGCATCGCATTGTACTATGCGCATGTAGCATTCTGTTTCAAgaAGTGCTTAGTCAAGTGACGGAAGATTATCCAACGATTATTCTAAGTGACATATCATCTCAggatataaaatcaattatcgaATTCATATATCACGGTGAGATCCGTGTTCCCGTTGATAATATATGCAGCTTGCTTGAAGCTGCACGATCGTTAAAAATAAGCGGCCTTGCTGATATAATTGGAGTTGGagagaatgaaattattagaagCAAAAAAGATTCTATGGAAGAAACTGCAACAGAGGTAGCAGAAATTACTGAATCTTTGGAGAATGACTCGCAAGAGACGAGTACTGTGGAAAATTGTattccaaataaaaagaagaaacgtcgCCGTGAGACTGTAAAGAAAGATTACAACAGCGACGTGCTGGCGTCTGCAATTAATGATTTGAAATTAGGACAGACTTTAATAGAGGCTGCTACTAAGTACAATATTCCACGCTCGACCTTGTATATGCGAGCGAAAGCATTAGGCATACATTTAAACGCATCGAGAAACGGATATCCCGCAGAGTGTATGAATGCAGCTATAAATGCTGTGATAAATGGTTCGAGCTTGCAGCATGCatcagaaatatttagaataccTAAAACTGTGTTATGGAGGCGTATACAAAAAGAGGGCTATCAGACCCTACGTCCTGAAGTGAAGAAGAGATCATACGCTTTAGACACGAGAGAAGCCGCTATTAAAGCTCTAGAAAGAGGGGAAAATTTGACAAAAGTTGCTCTggaatttaaaATACCAAAGACTACATTGTTTAGAGAAAAGGCACGGCTGGTAGATCAAGGTAAATTGCCGTTATCGTTCTGGAAGAAACGCAAAACGGAGAATGAGGAATTAAAAAAGTCGCGATTGGAAGAAGCTGTGGCTGCTTGCAAGAGCGGCCGAATGTCGCAAGCCGCGGCGTCTATGACCTATCGCATTCCAAAAACTACGATATGGCGAAGGCTCCAGCAAGATGGcaaaaaaatggaaagatcGTCGAACGCGAAGAAGCAACAACGATCGGTCGATACGCCAGAACTGCAAGATACTCAGGTGAAGATGCAGGAAACATCCAACTTCAATTATTGTGAGGTTGCATCGGAAATACCTATAACTTATATAGATGAGAACAGTATACCTGAGGATTCCGTGATAATCTTAACAACGGAGGAAATGGATGAGCTGAATCTAGAGGGAGGCAggcaaattattgtaaattcgGAATCTGGACAGGAATATATTCCATGTACGATAAGTATCGAAGATAGCTCAAACTATTCGGTGGCAGAAAGTTAG
- Protein Sequence
- MTDDGQCKINQSYRFKWNNYQNHLSNVVRQLLEEDCMVDVTLSAAGQRIHAHRIVLCACSILFQEVLSQVTEDYPTIILSDISSQDIKSIIEFIYHGEIRVPVDNICSLLEAARSLKISGLADIIGVGENEIIRSKKDSMEETATEVAEITESLENDSQETSTVENCIPNKKKKRRRETVKKDYNSDVLASAINDLKLGQTLIEAATKYNIPRSTLYMRAKALGIHLNASRNGYPAECMNAAINAVINGSSLQHASEIFRIPKTVLWRRIQKEGYQTLRPEVKKRSYALDTREAAIKALERGENLTKVALEFKIPKTTLFREKARLVDQGKLPLSFWKKRKTENEELKKSRLEEAVAACKSGRMSQAAASMTYRIPKTTIWRRLQQDGKKMERSSNAKKQQRSVDTPELQDTQVKMQETSNFNYCEVASEIPITYIDENSIPEDSVIILTTEEMDELNLEGGRQIIVNSESGQEYIPCTISIEDSSNYSVAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_01423555;
- 80% Identity
- iTF_01421670;