Veme003213.1
Basic Information
- Insect
- Vollenhovia emeryi
- Gene Symbol
- ttk
- Assembly
- GCA_000949405.1
- Location
- NW:208928-212733[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.7e-06 0.002 17.4 0.0 21 38 207 225 189 231 0.79 2 4 1.1e-11 8.2e-09 34.6 0.0 4 43 241 280 239 282 0.85 3 4 0.13 94 2.4 0.0 21 35 309 323 295 329 0.79 4 4 7.1e-12 5.3e-09 35.3 0.1 4 39 353 388 350 392 0.94
Sequence Information
- Coding Sequence
- ATGACTGACGCCGGCCAATGTAAAATCAACAAGAGCTTTCACTTCAAGTGGAACAACTATCAGAATCATCTGTCCGACGTCGTGCGGCAGCTCCTGGACGAGGACTGTATGGTGGATGTCATCCTGTCTGCGGCTGGCCAGCGTATTCACGCGCATCGCATTGTCTTGTGCGCGTGTAGCATTTTGTTTCAAGAAGTGCTTAGTCAAGTAACGGAAGATTACCCAACGATTATTCTAAGCGACATATCTCCTCAGGATATAAAATCGATTATCGAATTCGTGTATCACGGCGAGATCCGTGTTCCCGTCGACAATATCAGCAGCTTGCTCGAGGCGGCGCGATCGTTGCAAATAAGTGGCCTTGTCGACATAGACGGAGTTGGAGAGAGCGAAGTTGTTAAAAGTCAAAAAGATTCTACGGAAGAGACCACGACGGAGGCGGGGGAGATCGAGGACAATGCCGAGTCCCTGGAGAGTGACTCGCGCGATCCGAGCACCTCTGAGAATTGTATCCtaaacaaaaagaagaaacgtcgCCGTGAAAATGTCAAGAGATATTACAATGACGACATGCTGGCGTCTGCAATTAGCGACTTGAAGCTGGGGCAGACTCTAATAGAGGCTGCTACTAAACACAATATACCGCGCTCGACGTTGTACATGCGGGCGAAAGCACTGGGCATACATTTGAATGCGTCGAGGAACGGATATCCCGCGGAGTGCATGAGTGCAGCCATAAATGCCGTCATCAATGGCTCGAGCTTGCAGCATGCATCGGAGATATTTAGAATACCTAAAACCGTGTTGTGGAGACGTTTACAAAAGGAGGGCTATCAAACCCTACGTCCCGAGATGAAGAGGTCGTACGCTTTGGACACGCGGGAGGCCGCGGTCAAAGCTCTGGAGAGGGGGGAGAATTTGACGAAGGTTGCCCTggaatttaaaATACCAAAGACTACATTGTTTAGAGAAAAGACACGGCTGGTAGATCAAGGTAAACTGCCGTTGTCGTTTTGGAAGAAGCGCAAAACCGAGAACGAGGAGTTGAAAAAGTCGCGACTGGAAGAAGCTGTGGCTGCTTGCAGGGGTGGCAGGATGTCGCAGGCCACGGCGTCCATGACCTATCACATTCCGAAGACTACGATATGGCGAAGGCTTCAGCAGGATGGGAAGAAGGTGGAGAAGGCGTCGAATGCGAAGAAGCAGCAACGGCTGGTCGATACGTCAGTGTCGCATGACGCTCAGACGAAGATGCAAGAGACGTCCAATTTCAGTTACTGCGAGGTCGCGTCGGAAATACCTATAACTTATATAGACGAGGATAGTATACCTGAGGACTCCGTGATAATCCTGACGACGGAGGAAATGGACGAACTGAATCTAGAGGGAGGCAGacaaattattgtaaattcgGAATCCGGACAGGAATATATCCCGTGTACAATAAGTATCGAGGATAACGCCAACTATTCGGGGGCTGAGAGTTAG
- Protein Sequence
- MTDAGQCKINKSFHFKWNNYQNHLSDVVRQLLDEDCMVDVILSAAGQRIHAHRIVLCACSILFQEVLSQVTEDYPTIILSDISPQDIKSIIEFVYHGEIRVPVDNISSLLEAARSLQISGLVDIDGVGESEVVKSQKDSTEETTTEAGEIEDNAESLESDSRDPSTSENCILNKKKKRRRENVKRYYNDDMLASAISDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPAECMSAAINAVINGSSLQHASEIFRIPKTVLWRRLQKEGYQTLRPEMKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFREKTRLVDQGKLPLSFWKKRKTENEELKKSRLEEAVAACRGGRMSQATASMTYHIPKTTIWRRLQQDGKKVEKASNAKKQQRLVDTSVSHDAQTKMQETSNFSYCEVASEIPITYIDEDSIPEDSVIILTTEEMDELNLEGGRQIIVNSESGQEYIPCTISIEDNANYSGAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423555;
- 90% Identity
- iTF_01520401;
- 80% Identity
- iTF_01520401;