Rbic054144.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- bab2
- Assembly
- GCA_029963845.1
- Location
- JANEYF010004476.1:695565-697414[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.1e-14 1.7e-11 45.7 0.1 3 45 355 397 353 397 0.92
Sequence Information
- Coding Sequence
- ATGGGTACGGCACAGCAGTACTGCCTGAGATGGAACAATCATCGCTCAAACCTGTTAACAGTTTTCGACGAACTCCTCCAAAACGAAGCGTTCACAGACGTAACACTCGCATGTGAAGCCGGAGGGCCGATTAAATGCCACAGAATGGTTTTGGCTGCTTGTTCGCcatatttccaaaatttgttCACTGATCTCCCTTGCAAACACCCAGTAGTTGTATTAAAAGATGTCAAATATTCTGAAATTAAAGCAATATTAGAGTACATGTATAGAGGGGAAGTTAATGTTGCCCAAGATCAGTTAGCTGCCCTTTTAAAGGTTGCCGAAGCCTTGAAAGTAAAGGGATTGGTAGAAGAAAACAGGTCGAATAGAAGCCCAAAAGTAGAAGAGCCGATGGATCATTCCCCATCAATCACTACGTCTAATTCAGTCATGCAAAATACTGTCCACAGTAGCAGTAATAACTCTCCCCCACACTCCACAAATTCGATATACAAAAACCCGTACCACGTATACAATAACAAGTCTCAAGAACCTAATTCTCGAATGAATTTACCAATGTGGGCAGTACCTGGATTACCCTTGCCGCCTCATTCTTCGTCAGTACCAAATCCCAATCACCCCCATGCCGCCGCCACTGCTGCTGCCGCTATGTTAAACAGCTGTTATGAAGCTGCAAGCTCAGATATGTCTCCTCTCAAAAGAAAGAAGCTTTCTAGCCTGTTGATGAACAGGGATACACCAATTTTAAGGACGGTACTTGGTCAAGGACAAGCCGACTCATCCCAGCCCGTTAGCCTTGTTTGTCACCCAGATAGCGCTGATCATTCGAGTGGAACCGAAGAACGTATGAAGCACATGAAAAACGAACCTTCTGAAGATGCTCAATCCCCATACACCGACTTCACACCAATGAACGACGAAGAAGATAAATCTAAACTAGCTATTCCTTCATCCTCTCCTCAGTCGTTTGGCCACGAAATGAGAGGGGTAACTTCAGGTATTGCAACTTATGTTCCTACTCAAAAACCGGAATGGAAGCGATACAAACAGTATACGAGAAATGATATTATGTCCGCCATTGAAGCAGTAAGAAATGGAATGTCCGCATTGCAAGCTGCTAGGAAATACGGTGTACCCTCCAGAACGCTCTatgacaaagtaaaaaaattgggtATAACTACAAGTAGACCTTTCAAACGAGGAACTAATGGAAGTTCTGCGTGTTTCTCGTATAGTACTGGATCTCCATATGGCGGACATTTGTCAGAGACTGATGATGGTCCGATGAATAACAACTCCGCGTTGATCGAAGCTAGTACCTTCCTACAACATGCCTTAGACAGTCGTGGAGGTGACGAACGTGAAGCTCTAGCTGCTATGGCAGCTGCTGCTGCCGCTCACGCAGTGGCCTCGGGTCATTCGACAAGTCCTAGCAATCACGGTAGAGCGAGAAGCCCAAGCCCCAGTCCAACAATGTTAAAGTATATGAGACATAACAGTATGACTCCATCCCCCGCCCCTGGAAGTGACCACCATAACAGCCATAGCGAAACAAATGGAAGTTCCGAACGAGATCATGAAGATGACGAAGATCAGGTAGAAGACCTGTCAATTGGACGCAAAGAATCCCGAGAGTCTAGAGTTATTATGCCACCAATGAACCAGGTATCTGCCATTATAAAGAAGGAAGAAATGCTGATAGACAGTATAAAAGAAGAAGCGAGGAGAGAGGTAAGCCTTGACGGAGACGTGGAATGA
- Protein Sequence
- MGTAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACEAGGPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYSEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSNRSPKVEEPMDHSPSITTSNSVMQNTVHSSSNNSPPHSTNSIYKNPYHVYNNKSQEPNSRMNLPMWAVPGLPLPPHSSSVPNPNHPHAAATAAAAMLNSCYEAASSDMSPLKRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDSADHSSGTEERMKHMKNEPSEDAQSPYTDFTPMNDEEDKSKLAIPSSSPQSFGHEMRGVTSGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGTNGSSACFSYSTGSPYGGHLSETDDGPMNNNSALIEASTFLQHALDSRGGDEREALAAMAAAAAAHAVASGHSTSPSNHGRARSPSPSPTMLKYMRHNSMTPSPAPGSDHHNSHSETNGSSERDHEDDEDQVEDLSIGRKESRESRVIMPPMNQVSAIIKKEEMLIDSIKEEARREVSLDGDVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01296618; iTF_01368939; iTF_00886572; iTF_01290515; iTF_00885814; iTF_01369910; iTF_01289689; iTF_00110690; iTF_01014754; iTF_01014168; iTF_00110461; iTF_01344839; iTF_01345093; iTF_01239273; iTF_01238480; iTF_01240028; iTF_01240956; iTF_00196426; iTF_00195879; iTF_01307345; iTF_01307176; iTF_00413463; iTF_00413649; iTF_00443872; iTF_00444257; iTF_01186976; iTF_01188382; iTF_01241760; iTF_01244203; iTF_00392845; iTF_00392681; iTF_00387375; iTF_00387118; iTF_00792304; iTF_00792015; iTF_01226547; iTF_01227437; iTF_01047028; iTF_01047532; iTF_00056469; iTF_00056723; iTF_01310261; iTF_01310692; iTF_00387991; iTF_00388821; iTF_00721911; iTF_00722223; iTF_00755383; iTF_00755893; iTF_00739865; iTF_00740141; iTF_01351577; iTF_01351887; iTF_01106490; iTF_01105494; iTF_00395579; iTF_00395178; iTF_00436411; iTF_00437158; iTF_01121821; iTF_01121515; iTF_00391871; iTF_00391992; iTF_00911199; iTF_00910439; iTF_00025952; iTF_00026197; iTF_01013536; iTF_01013248;
- 90% Identity
- iTF_01310261;
- 80% Identity
- iTF_01296618;