Ntra007582.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- bab1
- Assembly
- GCA_963243735.1
- Location
- OY725337.1:24944809-24946632[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-14 1.1e-11 45.7 0.1 3 45 346 388 344 388 0.92 2 2 4.8 1.2e+03 0.8 0.4 6 18 455 468 451 474 0.83
Sequence Information
- Coding Sequence
- atgGCCACCGCTCAACAATACTGCCTTCGATGGAACAACCATCGCTCAAACCTTTTAACAGTATTTGACGAGCTCCTGCAAAACGAAGCGTTTACAGACGTCACTCTAGCTTGTGAAGGTGGCACCCCTATAAAATGCCATAGGATGGTCCTTGCGGCCTGTTCGCCCTATTTCCAAAACCTCTTTACAGGTCTACCTTGCAAACACCCCGTGGTAGTGTTAAAAGATGTCAAATACAGCGAAATCAAAGCGATATTAGAGTATATGTATAGAGGAGAAGTTAATGTAGCTCAAGACCAATTAGCTGCGTTGCTCAAGGTAGCTGAAGCTTTAAAAGTTAAAGGTTTAGTTGAGGAAAATAGATCTACGAGGAGTCCGAAGAATGAACCAATGGATCATTCACCTTCTATTTCTACCTCAAGTTCCGTTATGCAAAACATCGTCCACAGCAGCTCTAATAGCTCTCCCCCGCACTCCACCAATGCCGTTTACAAAAATCCTTATCACATGTTCAACAATAAACCTCAAGAATCACGCATGAACCTCCCCATGTGGGCGGTACCAGGGTTACCTTTACCTCCTCATAATTCTCAAGTTCCTAACTCCAGTCACTCTACAACGGGGATGTTAAGTAGCTGTTACGATGTCGCCACCTCAGATATGTCCCCGCTGAGAAGGAAGAAATTGTCAAGTTTGTTGATGAACAGGGATACACCGATTTTGAGGACTGTCTTGGGACAAGGACAAGCCGATTCTTCGCAACCTGTTAGTTTAGTCTGTCATCCTGATAGTGCTCAACAGAGTAATGGAAATGAAGATAGACTTAAGCACATGAAAAACGAACCTTTAGAAGACGCCCAATCTCCGTATACAGACTTTTCTCCCATAAACGATGAAGAGGAAAAATCCAAATTAGCAATACCTTCATCATCCCCTCAATCCTTCAGTCACGACATGAGAGGAGTCAGCTCAGGCATAGCCACCTACGTCCCTACCCAAAAACCAGAATGGAAACGATATAAGCAATATACAAGAAACGACATCATGTCTGCCATTGAAGCCGTCAGAAACGGAATGTCAGCGCTACAAGCTGCTAGAAAATACGGAGTACCCAGTAGGACGCTATACGATAAAGTTAAGAAATTAGGAATAACCACGAGTAGACCGTTCAAAAGAGGTACTAATGGATCGTCATCTTGCTTCTCCTACAGTACAGGATCGCCTTACGGAGGTCACCTATcagaaaatgatgaaaatccCATGAATAACAGCTCAGCTTTACTAGAAGCTAGTACTTTTCTTCAACACGCGTTGGATGGAAGAGGAGGTGACGAGCGTGAAGCTTTAGCTGCAATGGCGGCTGCTGCTGCTGCTCACGCTGTAGCGTCAGGACACTCAACGAGTCCCAGCAATCTAGGTAGAGCTAGGAGTCCGAGTCCTAGTCCTACTATGCTCAAATACATGAGAAACGTTAGCTTAACACCTTCGCCTGCCCCGGGAAGCGATCACCACACTTCTCTCAGCGAGACAAATGGTAGTAGCGAAAGAGACCACGACGATGATGAGGATCAAGTAGAAGATCTCTCTATAAACCGAAAAGAGCATAGAGAAAGTACTACTCGCGTTATAATGCCTCCAATGAACCAAGTCTCTgccattataaaaaaagaagaaatgctCATCGATAGCATCAAGGAAGAGGTTAGGAGAGAAGTAAGTTTAGATTGCGAAGGGGAATAG
- Protein Sequence
- MATAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACEGGTPIKCHRMVLAACSPYFQNLFTGLPCKHPVVVLKDVKYSEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSTRSPKNEPMDHSPSISTSSSVMQNIVHSSSNSSPPHSTNAVYKNPYHMFNNKPQESRMNLPMWAVPGLPLPPHNSQVPNSSHSTTGMLSSCYDVATSDMSPLRRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDSAQQSNGNEDRLKHMKNEPLEDAQSPYTDFSPINDEEEKSKLAIPSSSPQSFSHDMRGVSSGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGTNGSSSCFSYSTGSPYGGHLSENDENPMNNSSALLEASTFLQHALDGRGGDEREALAAMAAAAAAHAVASGHSTSPSNLGRARSPSPSPTMLKYMRNVSLTPSPAPGSDHHTSLSETNGSSERDHDDDEDQVEDLSINRKEHRESTTRVIMPPMNQVSAIIKKEEMLIDSIKEEVRREVSLDCEGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_01047532; iTF_00387375; iTF_00387118; iTF_00792304; iTF_00792015;
- 80% Identity
- iTF_01047532;