Basic Information

Insect: Lochmaea capreae
Gene Symbol: bab1
Assembly: GCA_949126875.1
Location: OX421395.1:26283666-26289944[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 5.3e-14 1.3e-11 45.7 0.1 3 45 350 392 348 392 0.92

2 2 6.9 1.6e+03 0.5 0.5 6 17 459 471 455 474 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	5.3e-14	1.3e-11	45.7	0.1	3	45	350	392	348	392	0.92
2	2	6.9	1.6e+03	0.5	0.5	6	17	459	471	455	474	0.78

Sequence Information

Coding Sequence: ATGGCAAATGCTCAACAATACTGCCTTCGTTGGAACAACCATCGCTCCAACCTCCTAACCGTATTTGATGAACTTCTTCAAAATGAAGCCTTTACTGATGTAACACTGGCTTGTGAGGGTGGTTCTCCCATTAAATGTCACAGAATGGTCTTGGCAGCTTGTTCTCCTTATTTTCAAAATCTTTTTATAGGATTGCCATGCACACATCCAGTGGTAGTCCTTAAAGATGTTAAACATATGGAAATTAAAGCGATTCTAGAGTATATGTACCGAGGAGAAGTAAATGTAGCACAAAACCAACTTGCTGCTTTGCTCAAAGTAGCCGAGGCCTTAAAAGTCAAAGGTttagttgaagaaaataaatccaACACTAATCCAAAAGAAGAGGAACCTATTGATCATTCACCTTCAATTACTACGTCTAGTTCAGTAATGCAAAATATTGTTCATAGCAGTAGCAACTCATCTCCGCCTCACTCCACGAATTCGATGTACAAAAAcccatacaatttttataacaacAAACCTCAAGATTCGAGATTAAATCTACCAATGTGGGCTATGCCCGGTTTACCCCTGCCACCACACACTTCGTCACAAGTATCTAGCAATAATCATCATAGTCCAGCAACTATGCTCAGTGGATGCTATGACGCTGCTACATCAGATATGTCTcctttaaaaaagaagaaaatgtcCAGCTTGCTTATTCAGAGGGACACACCAATACTGAGGACTGTTTTGGGACAAGGACAAGCCGATTCTTCTCAACCTGTCAGTTTAGTTTGTCATCCAGATAGTGCAGAACAAGGTAACGGAAACGAAGAAAGAATAAAGGTAAGACACATGAAAAATGAACCTTTAGAAGATGCACAATCGCCATATACAGATTTTATCCCTATGCACGAAGACGAAGAAAAATTAAAGTTGGCAATTCCTTCTTCGTCTCCACAGTCGTACTCACATGAAATGCGTGGTGTTACCGGTATTGCTACCTATGTGCCTACGCAAAAACCTGAGTGGAAGCGGTATAAGCAGTATACCAGGAACGACATAATGTCAGCCATAGAAGCTGTACGAAACGGCATGTCAGCACTGCAAGCTGCAAGAAAATATGGTGTACCTTCTAGGACATTGTATGATAAAGTTAAAAAATTGGGTATAACTACTAGCCGTCCGTTTAAACGAGGCAGTAATGGAAGCTCAGCATGTTTTTCCTATAATACTGGTTCTCCATACGGCGGCCATCTTTCTGAATCCGACGAAAATCCAATGCACAATAATAATTCGGCGCTACTTGAAGCCAGCACGTTTCTTCAGCATGCACTAGACGGCAGAGGAGGAGATGAGCGGGAGGCATTAGCTGCAATGGCTGCTGCCGCTGCCCATGCTGTCGCCTCGGGGCATTCTACCAGTCCAAGTAATATTGGGAAAGCTAGGAGTCCCAGCCCTAGTCCTACAATGTTGAAATATATAAGACACGTAAGTTTGACTCCTTCTCCAGCTCCTGGCAGTGACCACCAGAATTCTCATAGTGAAACTAATGGAAGTTCAGAAAGAGACCAAGAAGATGAAGAAGATCAAGTTGAAGATCTTTCAATAAATAGAAAAGAACACAGAGAAAGGGAATCAACAGGAGTGATCATGCCTCCCATGAACCAAGTTGCTGCTATAGTTAAAAAAGAAGAGCTGCTGGTAGAAAATCTTAAAGAAGAATCTAGAAGAGAAGTAAGTTTAGATTGTGAAGgggaataa
Protein Sequence: MANAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACEGGSPIKCHRMVLAACSPYFQNLFIGLPCTHPVVVLKDVKHMEIKAILEYMYRGEVNVAQNQLAALLKVAEALKVKGLVEENKSNTNPKEEEPIDHSPSITTSSSVMQNIVHSSSNSSPPHSTNSMYKNPYNFYNNKPQDSRLNLPMWAMPGLPLPPHTSSQVSSNNHHSPATMLSGCYDAATSDMSPLKKKKMSSLLIQRDTPILRTVLGQGQADSSQPVSLVCHPDSAEQGNGNEERIKVRHMKNEPLEDAQSPYTDFIPMHEDEEKLKLAIPSSSPQSYSHEMRGVTGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSSACFSYNTGSPYGGHLSESDENPMHNNNSALLEASTFLQHALDGRGGDEREALAAMAAAAAHAVASGHSTSPSNIGKARSPSPSPTMLKYIRHVSLTPSPAPGSDHQNSHSETNGSSERDQEDEEDQVEDLSINRKEHRERESTGVIMPPMNQVAAIVKKEELLVENLKEESRREVSLDCEGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01295881;
90% Identity: iTF_01106490;
80% Identity: iTF_00911199;