Pcer017864.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- bab1
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000386.1:228418-233963[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-12 2.2e-10 41.4 0.1 3 45 362 404 360 404 0.92 2 2 2.7 2.3e+02 2.9 0.2 6 18 470 483 467 488 0.85
Sequence Information
- Coding Sequence
- ATGACTCAATCGCAGCAGTACTGCCTGCGATGGAACAATCATCGGTCCAATCTGCTGACTGTCTTCGACGAACTTCTCCAGAATGAAGCTTTTACCGACGTCACGATAGCATGTGATGGAGGAAGTTCCATTAAATGTCATCGGATGGTTTTAGCAGCTTGTTCGCCATATTTTCAGAACCTTTTCACAGAACTACCATGTAAACATCCCGTAGTGGTACTAAAAGACGTCAGATACTGTGAAATAAAAGCTATTCTGGAATACATGTACAGGGGGGAAGTAAATGTTGCCCAGGATCAATTAGCTGCACTACTGAAGGTTGCAGAAGCACTGAAAGTTAAAGGGTTGGTGGAAGAAAACAGATCTTGTAGAAGTCCAATTCGAGAAGAACCACCCCCGCAAGTAGATCAAGCGCCCCAGATTCCAACGTCAAATTCCATCGTACCGAATCCCGTCCATAGCAGCAATAGAATAAGCTCGCCGCCCCATTCAACGAATTCGATGTACAAATCCCCGTATAGTTCGTACGAGAGGAAACCACACACTGACCACAATGCCCGAATGAATTTACCCATGTGGGCTGTGCCTGGATTACCATTACCACCTCACACAGCATCGGTTCCAAATCAGACGCATCCCCACGCAGCAGCAACCGCTGCAGCCGCCATGTTAACTAGCGCATACGAAGCAGTAAGTTCGGATATGTCTcctctaaaaagaaaaaaactaagcaGTCTCTTGATGCAACGGGACACTCCGATCTTGAGGACGGTGTTAGGACAAGGACAAACCGACTCCTCACAGCCTGTTAGTTTGGTGTGCCATCCTGATAACTCGGATCTCTCTGGAAGCGAAGAAAGAATGGTGAAACATCTAAAGAATGAACCTTCCGAAGATGCCCAATCACCGTACACTGACTTCGCGGAACGAATGACTGACGAAGAAGAAAAATCCAAATTAGCCATTCCCTCTTCTTCTCCCCAATCTTATACACATGACATTCGAACAACCGTAACATCGGGAATTGCACCATACGTTCCTACTCAGAAACCTGAATGGAAGAGATATAAACAATACACCAGGAATGATATTATGTCTGCTATTGAGGCGGTAAAAAACGGAATGTCCGCACTGCAAGCGGCCAGGAAATATGGCGTTCCTTCTAGAACTCTTTATGATAAGGTTAAGAAAATGGGAATTACAACGAGTAGACCATTTAAGAGAGGAAACAATGGTAGCTCAGCATGTTTCCCTTATAGTTCTGGGTCTCCATATGGGGGTCATCTGTCTGAAAGCGATGAAAACATCAATAACAATTCGGCGCTTTTGGAAGCAAGTACGTTTCTTCAACATGCTTTGGATAGTAGGGGTGGTGATGAAAGAGAAGCTCTAGCCGCAATGGCGGCTGCAGCTGCAGTTCATGCTGTTGCTTCTGGACACTCTACTAGTCCCAATAACTTGGGACAAGCGCGTAGCCCTAGCCCCAGTCCTACAATGCTTAAATACATGAGGCACAGTAGTCTTACTCCTTCTCCAGCCCCAGGAAGCGATCATCATCACAGCGACCAAACGAATGGAAGCTCTGAAAGGGAGAGAGAGGAGGAGGAAGATCAAGTCGAGGACCTGTCGATAAATAGAAAACAAGCTATTGAGTCGCGGGTTATTATGCCGCCAATGAACCAAATGTCCGCCATTATAAAAAAGGAAGAAATTTTGATGGACAACTTTAAGGTGGACGTAAGAAGGGAAATGCGTGTGGAAGGAGAGGCGGATTAG
- Protein Sequence
- MTQSQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTIACDGGSSIKCHRMVLAACSPYFQNLFTELPCKHPVVVLKDVRYCEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSCRSPIREEPPPQVDQAPQIPTSNSIVPNPVHSSNRISSPPHSTNSMYKSPYSSYERKPHTDHNARMNLPMWAVPGLPLPPHTASVPNQTHPHAAATAAAAMLTSAYEAVSSDMSPLKRKKLSSLLMQRDTPILRTVLGQGQTDSSQPVSLVCHPDNSDLSGSEERMVKHLKNEPSEDAQSPYTDFAERMTDEEEKSKLAIPSSSPQSYTHDIRTTVTSGIAPYVPTQKPEWKRYKQYTRNDIMSAIEAVKNGMSALQAARKYGVPSRTLYDKVKKMGITTSRPFKRGNNGSSACFPYSSGSPYGGHLSESDENINNNSALLEASTFLQHALDSRGGDEREALAAMAAAAAVHAVASGHSTSPNNLGQARSPSPSPTMLKYMRHSSLTPSPAPGSDHHHSDQTNGSSEREREEEEDQVEDLSINRKQAIESRVIMPPMNQMSAIIKKEEILMDNFKVDVRREMRVEGEAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_00443872;
- 80% Identity
- iTF_01239273;