Osur015331.1
Basic Information
- Insect
- Oryzaephilus surinamensis
- Gene Symbol
- bab1
- Assembly
- GCA_004796505.1
- Location
- SSSI01009606.1:23244-25088[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.8e-15 4e-12 45.7 0.1 3 45 361 403 359 403 0.92 2 2 1.1 5.8e+02 0.4 1.1 6 18 470 483 466 487 0.81
Sequence Information
- Coding Sequence
- atgggCACCGCTCAGCAGTATTGCCTTCGTTGGAACAATCACCGTTCAAATTTACTGACAGTGTTCGATGAACTTTTACAAAATGAAGCATTTACCGACGTAACATTAGCGTGTGACGGTGGTAATCCAATTAAGTGCCATAGAATGGTTCTAGCAGCGTGTTCgccatattttcaaaatttattcacTGACCTACCATGCAAACATCCAGTTGTTGTATTAAAAGATGTAAAATATTGTGaaataaaagcaattttaGAATATATGTATCGCGGTGAAGTAAATGTTGCTCAAGACCAATTAGCCGCTTTATTGAAAGTGGCGGAAGCGCTAAAAGTTAAGGGTTTGGTCGAAGAGAATCGCTCAAGTAACAAATCAAGTCCAAAGAATGACGATTTAATGGATCATTCACCATCAATCACAACATCTAATTCATCGATGCATAATCCAGTGCATAGCAGCAGCAATAATTCACCCCCACattcaacaaattcaatttacaagaACCCATACGGTCTGTATGGTGGGAAATCTTCACAAATGGAGCACAGTTCCCGAATGAATTTGCCGATATGGGCCGTGCCGGGACTACCATTGCCCCAACATTCCGGCACGGTGCCAACCCAAAGCCACCCCCATGCCGCCGCCACTGCTGCCGCAGCAATGTTGAACAGTTGCTATGAGGCGGCCAGTTCAGATATGTCGCCATTAAAACGCAAGAAACTCTCCAGTTTGTTGATGAACAGAGACACACCAATCTTGAGGACAGTTCTTGGTCAAGGCCAAGCCGATTCCTCACAACCAGTTAGCCTAGTATGCCATCCTGACAGCCAAGACCAACACTCGAATGGGAATGAAGAACGAATAGttaaacaCATGAAAAATGAGCCAGCCGAAGATGCTCAATCTCCCTACACCGATTTCACCGTGATGAATGATGAAGAAGATAAATCGAAAATGGCCATACCTTCGTCGTCGCCGCAATCATTTTCGCACGAAATGCGTGGCGTTTCTTCAGCGATTGCCACTTATGTGCCCACACAGAAACCAGAATGGAAACGTTACAAACAATACACCCGCAACGATATCATGTCGGCAATTGAAGCCGTCCGAAATGGCATGTCCGCTTTGCAAGCTGCACGAAAATATGGCGTTCCATCGCGAACATTGTACGACAAAGTGAAAAAATTGGGCATAACAACAAGTCGTCCGTTTAAACGCGGCTCAAATGGCAGTCAGGCGTGTTTCTCCTTCAACACCGGATCACCGTTCGGTGGTAATTTGTCGGAGAGTGAAGAGACTTCGATGAACAACAATACGGCCCTATTGGAGGCGAGCACTTTTCTACAGCATGCGTTAGATAGCCGTGGCGGTGATGAGCGTGAAGCATTGGCGGCAATGGCGGCTGCAGCAGCGGCACATGCCGTCGCCTCCGGCCATTCCACCAGCCCCGGCCAGGCCAGAAGTCCCAGTCCGAGCCCAACTTTAATCAAATACATGCGACAGAACAGTATGACACCGTCCCCGGCCGCTGGCAGCGATCATCATCACAGCGAAACGAACGGCAGTTCGGAACGCGATCGCGACGACGATGAGGACCAGGTTGAGGACTTGTCAATTGGTAGGAAACAAGAGGCGCGGGTTATTATGCCGCCCATGAACCAAGTGTCAGCTATAATGAAAAAGGAGGAAATGTTGATAGATTGTATAAAAGAGGAGGTGCGACGTGAGGTAAGCGTTGAAGGAGATgctgaataa
- Protein Sequence
- MGTAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACDGGNPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYCEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSSNKSSPKNDDLMDHSPSITTSNSSMHNPVHSSSNNSPPHSTNSIYKNPYGLYGGKSSQMEHSSRMNLPIWAVPGLPLPQHSGTVPTQSHPHAAATAAAAMLNSCYEAASSDMSPLKRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDSQDQHSNGNEERIVKHMKNEPAEDAQSPYTDFTVMNDEEDKSKMAIPSSSPQSFSHEMRGVSSAIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSQACFSFNTGSPFGGNLSESEETSMNNNTALLEASTFLQHALDSRGGDEREALAAMAAAAAAHAVASGHSTSPGQARSPSPSPTLIKYMRQNSMTPSPAAGSDHHHSETNGSSERDRDDDEDQVEDLSIGRKQEARVIMPPMNQVSAIMKKEEMLIDCIKEEVRREVSVEGDAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_01344839;
- 80% Identity
- iTF_01121821;