Phis042000.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- RpL31
- Assembly
- GCA_963924545.1
- Location
- OZ004699.1:24373772-24384211[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9e-14 1.5e-11 45.4 0.1 3 45 354 396 352 396 0.92
Sequence Information
- Coding Sequence
- ATGGGCACGGCGCAGCAGTACTGCCTACGATGGAACAACCACCGCTCGAACCTCCTTACGGTCTTTGACGAGCTTCTCCAGAACGAGGCCTTCACCGACGTCACGCTAGTCTGCGATGGAGGCGGCCCCATCAGATGCCACAGGATGGTGCTCGCCGCCTGCTCCCCCTATTTCCAGAACCTCTTCACCGACTTGCCCTGCAAGCACCCTGTAGTCGTCCTCAAAGACGTCAAATACTGTGAAATCAAAGCCATCCTGGAATATATGTATAGGGGCGAAGTAAACGTTGCCCAAGACCAACTGGCTGCGCTCTTAAAAGTGGCGGAAGCCCTGAAAGTCAAAGGCTTGGTGGAGGAAAACAGGTCAAATAGAAGCCCCAAAGACGAGGAACCAATTGACCACTCGCCTTCCATCACCACGTCTAACTCGGTGATGCAGAGCACCGTCCACAGTAGTAGCAATACTTCTCCTCCACATTCGACCAACTCCATCTATAAGAACCCCTACAACTTGTACAGCACCAAACCTCAAGAACACAGCTCTAGGATGAATCTGCCCATGTGGGCAGTACCTGGCCTGCCTCTGCCACCTCATTCATCTTCGGTGCCTAATCCCAACCACCCCAATGCTGCTGCCACCGCTGCTGCCATGCTCAACAGCTGCTATGAGGCAGCCAGCTCAGATATGTCTCCTTTGAAGAGGAAAAAACTCTCCAGTTTGTTGATGAACAGAGACACGCCGATTCTGAGGACGGTACTCGGCCAAGGCCAACCCGATTCGTCTCAACCGGTTAGCCTTGTATGCCATCCGGACAGCGGTGAACAGTCGTCCGGAAACGAAGATCGCATGAAACACATCAAAAATGAACCTTCTGAAGACGCTCAATCTCCGTACACGGATTTCACGCCGATGAACGACGAAGAGGACAAATCCAAGCTGGCCATTCCTTCGTCCTCTCCTCAATCCTTCTCCCACGAGATGAGGGGAGTTAGCTCAGGGATAGCCACTTATGTTCCAACCCAGAAACCGGAATGGAAACGGTACAAACAATATACGAGGAACGATATCATGTCTGCCATTGAGGCAGTAAGGAACGGAATGTCGGCTTTACAAGCTGCCCGGAAATACGGCGTACCATCCAGAACACTGTACGATAAAGTCAAGAAATTAGGGATAACCACTAGTAGGCCGTTCAAACGGGGCACCAACGGTAGTTCCGCGTGCTTTCCCTACGGCACTGGTTCGCCCTATGGAGGACATTTATCCGAGACCGATGAAGGGCCGATAAACAACAATTCCGCCCTGATAGACGCCACCACGTTCCTCCAACACGCCATGGAGAACCGTGGAGGAGACGAACGGGAGGCCCTGGCCGCCATGGCAGCTGCAGCGGCAGCTCACGCAGTAGCTTCGGGGCATTCCACTAGCCCGAGCAACCATGGCCGCGCGAGAAGTCCGAGTCCCAGTCCGACGATGCTGAAATACATGAGGCATGGCAGTATGACTCCATCGCCCGCCCCTCACAGTCATAGCGAAACAAATGGAAGTTCGGAGAGGGACCATGAAGAAGAGGAGGACCAGGTGGAGGATTTGTCTATCGGGCGAAAAGAGTCCAGAGAATCCAGAGTCATCATGCCGCCTATGAACCAGGTCTCCACTATTATAAAGAAGGAGGATATGCTGATTGACAGTATAAAGGAGGAGGCGGCGAGGAGAGAGTCCAAGATGGCCAAACAGAAAggagaaaagaaaggaaaatcTGCTATCAATGAAGTAGTAACGAGGGAATACACAGTCAACCTCCACAAGAGGTTACATGGCATTGGATTTAAAAAACGTGCCCCCCGGGCCATTAAAGCAATCCGCCAATTCGCTGAAAAACAAATGGGGACTCCTGATGTTAGGATTGatacaaaactaaataaacaGTTGTGGTCAAAGGGTATTAGaaatGTACCATTCCGCGTACGTGTACGCTTGTCACGTAGGAGGAATGATGACGAAGACTCTGTGAACAAATTGTACACTTTAGTGACATATGTGTCCGTAGCCACATTTAAGGGACTACAAACAGAAAATGTAGATGCCAGTCAGGAATAG
- Protein Sequence
- MGTAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLVCDGGGPIRCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYCEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSNRSPKDEEPIDHSPSITTSNSVMQSTVHSSSNTSPPHSTNSIYKNPYNLYSTKPQEHSSRMNLPMWAVPGLPLPPHSSSVPNPNHPNAAATAAAMLNSCYEAASSDMSPLKRKKLSSLLMNRDTPILRTVLGQGQPDSSQPVSLVCHPDSGEQSSGNEDRMKHIKNEPSEDAQSPYTDFTPMNDEEDKSKLAIPSSSPQSFSHEMRGVSSGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGTNGSSACFPYGTGSPYGGHLSETDEGPINNNSALIDATTFLQHAMENRGGDEREALAAMAAAAAAHAVASGHSTSPSNHGRARSPSPSPTMLKYMRHGSMTPSPAPHSHSETNGSSERDHEEEEDQVEDLSIGRKESRESRVIMPPMNQVSTIIKKEDMLIDSIKEEAARRESKMAKQKGEKKGKSAINEVVTREYTVNLHKRLHGIGFKKRAPRAIKAIRQFAEKQMGTPDVRIDTKLNKQLWSKGIRNVPFRVRVRLSRRRNDDEDSVNKLYTLVTYVSVATFKGLQTENVDASQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295881;
- 90% Identity
- iTF_01227437; iTF_00721911; iTF_00722223; iTF_01014168; iTF_01014754; iTF_00110461; iTF_00110690;
- 80% Identity
- iTF_01227437;